PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G60470.1 | ||||||||
Common Name | IDD13 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 450aa MW: 50484 Da PI: 9.6982 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.3e-05 | 64 | 86 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H AT5G60470.1 64 FFCEICNKGFQREQNLQLHKRGH 86 67******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 63 | 86 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.11E-5 | 63 | 86 | No hit | No description |
PROSITE profile | PS50157 | 10.803 | 64 | 86 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.009 | 64 | 86 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 5.0E-6 | 64 | 86 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 66 | 86 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 120 | 106 | 136 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.9E-4 | 129 | 162 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.11E-5 | 136 | 161 | No hit | No description |
SMART | SM00355 | 260 | 141 | 161 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MTASHSLALS MTKSTSPLIL TLTLSLQPPL KHPRKRETFQ EIQAYPNAEV ISLSPKSLMA 60 TNRFFCEICN KGFQREQNLQ LHKRGHNLPW KLKQKTNKNQ VKKKVYICPE KSCVHHDPAR 120 ALGDLTGIKK HFSRKHGEKK WKCDKCSKKY AVISDWKAHN KICGSREFRC DCGTLFSRKD 180 SFISHRSFCD VLAEESSKFF SVPSPLAANS TIATVTDTNN PILIQSQLDQ SSTGTADLNV 240 NNNHTTLFGQ KFTNSNPTQQ QPNALALSSP PSPRSTSDSV HNLWKLQEEE CAHQWLLNEY 300 MNNNKNIFHK GIFKNQEDEI KKGNIYSGSN PTDGNIASLF SYNQEAVNMA SFSATTLLQK 360 VAQTGTPSSS ETSTTMFGQM TSSIFNNTML NSYCLTAKNN EEELTRDFLG VGSSEDQQRL 420 HRHRFPSSVP LTANHDIPKL AATIVGRKQP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 9e-31 | 137 | 202 | 3 | 68 | Zinc finger protein JACKDAW |
5b3h_F | 9e-31 | 137 | 202 | 3 | 68 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 240256464 | 0.0 | ||||
Genevisible | 247633_at | 0.0 | ||||
Expression Atlas | AT5G60470 | - | ||||
AtGenExpress | AT5G60470 | - | ||||
ATTED-II | AT5G60470 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G60470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G60470 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT026428 | 0.0 | BT026428.1 Arabidopsis thaliana At5g60470 mRNA, complete cds. | |||
GenBank | DQ056731 | 0.0 | DQ056731.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At5g60470) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_200855.4 | 0.0 | C2H2 and C2HC zinc fingers superfamily protein | ||||
Swissprot | F4JYZ8 | 0.0 | IDD13_ARATH; Protein indeterminate-domain 13 | ||||
TrEMBL | A0A178UIB8 | 0.0 | A0A178UIB8_ARATH; Uncharacterized protein | ||||
STRING | AT5G60470.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 | Representative plant | OGRP95 | 16 | 242 |
Link Out ? help Back to Top | |
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Phytozome | AT5G60470.1 |
Entrez Gene | 836168 |
iHOP | AT5G60470 |
wikigenes | AT5G60470 |