PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G58620.1
Common NameMZN1.16, MZN1.8, TZF9
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 607aa    MW: 66447.6 Da    PI: 5.2252
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G58620.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08254274526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ G C++Gd+C +aHg
  AT5G58620.1 254 PCPEFRK-GSCSRGDTCEYAHG 274
                  8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127965.3E-953123IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.73E-1354132IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.70857132IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-1357132IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00445787IPR002110Ankyrin repeat
CDDcd002047.81E-1459165No hitNo description
SMARTSM002480.005392124IPR002110Ankyrin repeat
PROSITE profilePS500889.29792127IPR002110Ankyrin repeat
SMARTSM003564.9E-5249275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4253276IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-6254274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263254276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4282312IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.221284308IPR000571Zinc finger, CCCH-type
SMARTSM0035620284307IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020100anatomyhypocotyl
PO:0025022anatomycollective leaf structure
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MGVDELSHLK FSLLLESSAC NDLSGFKSLV EEEGLESIDG SGLWYGRRLG SKKMGFEERT  60
PLMIAALFGS KEVVDYIIST GLVDVNRSCG SDGATALHCA VSGLSANSLE IVTLLLKGSA  120
NPDSCDAYGN KPGDVIFPCL SPVFSARMKV LERLLKGNDD LNEVNGQEES EPEVEVEVEV  180
SPPRGSERKE YPVDPTLPDI KNGVYGTDEF RMYAFKIKPC SRAYSHDWTE CPFVHPGENA  240
RRRDPRKYHY SCVPCPEFRK GSCSRGDTCE YAHGIFECWL HPAQYRTRLC KDETNCSRRV  300
CFFAHKPEEL RPLYPSTGSG VPSPRSSFSS CNSSTAFDMG PISPLPIGAT TTPPLSPNGV  360
SSPIGGGKTW MNWPNITPPA LQLPGSRLKS ALNAREIDFS EEMQSLTSPT TWNNTPMSSP  420
FSGKGMNRLA GGAMSPVNSL SDMFGTEDNT SGLQIRRSVI NPQLHSNSLS SSPVGANSLF  480
SMDSSAVLAS RAAEFAKQRS QSFIERNNGL NHHPAISSMT TTCLNDWGSL DGKLDWSVQG  540
DELQKLRKST SFRLRAGGME SRLPNEGTGL EEPDVSWVEP LVKEPQETRL APVWMEQSYM  600
ETEQTVA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.491890.0floral meristem| leaf| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306971050.0
Genevisible247795_at0.0
Expression AtlasAT5G58620-
AtGenExpressAT5G58620-
ATTED-IIAT5G58620-
Function -- GeneRIF ? help Back to Top
  1. TZF9 is involved in post-transcriptional regulation, such as mRNA processing or storage pathways, to regulate plant innate immunity.
    [PMID: 24285750]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G58620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
IntActSearch Q9LUZ4
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G58620
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0207550.0AB020755.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZN1.
GenBankAY0541760.0AY054176.1 Arabidopsis thaliana AT5g58620/mzn1_70 mRNA, complete cds.
GenBankAY1033140.0AY103314.1 Arabidopsis thaliana AT5g58620/mzn1_70 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_200670.10.0zinc finger (CCCH-type) family protein
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A178UPU00.0A0A178UPU0_ARATH; Uncharacterized protein
STRINGAT5G58620.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Representative plantOGRP7091569
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Ma L,Zhao H,Deng XW
    Analysis of the mutational effects of the COP/DET/FUS loci on genome expression profiles reveals their overlapping yet not identical roles in regulating Arabidopsis seedling development.
    Development, 2003. 130(5): p. 969-81
    [PMID:12538522]
  3. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  4. Sun J, et al.
    The CCCH-type zinc finger proteins AtSZF1 and AtSZF2 regulate salt stress responses in Arabidopsis.
    Plant Cell Physiol., 2007. 48(8): p. 1148-58
    [PMID:17609218]
  5. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  6. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]
  7. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]
  8. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]
  9. Maldonado-Bonilla LD, et al.
    The Arabidopsis tandem zinc finger 9 protein binds RNA and mediates pathogen-associated molecular pattern-triggered immune responses.
    Plant Cell Physiol., 2014. 55(2): p. 412-25
    [PMID:24285750]