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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
AT5G53980.1 |
| Common Name | ATHB52, ATHB-52, HB52, K19P17.15 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
HD-ZIP |
| Protein Properties |
Length: 156aa MW: 17934.1 Da PI: 7.985 |
| Description |
homeobox protein 52 |
| Gene Model |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58.8 | 9e-19 | 10 | 64 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+ ++t++q+++Le++F +n+++ + + +L+++lgL++rqV vWFqN+Ra+ k
AT5G53980.1 10 NKKKRLTQDQVRQLEKCFTMNKKLEPDLKLQLSNQLGLPQRQVAVWFQNKRARFK 64
67788************************************************98 PP
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| 2 | HD-ZIP_I/II | 105.3 | 4.6e-34 | 10 | 102 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
+kk+rl+++qv++LE++F++++kLep+ K +l+++Lgl +rqvavWFqn+RAR+kt+ lE+++ +L+++++a +++++Le++v+ L++elk+
AT5G53980.1 10 NKKKRLTQDQVRQLEKCFTMNKKLEPDLKLQLSNQLGLPQRQVAVWFQNKRARFKTQSLEVQHCTLQSKHEAALSDKAKLEHQVQFLQDELKR 102
59****************************************************************************************986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009637 | Biological Process | response to blue light |
| GO:0009646 | Biological Process | response to absence of light |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 156 aa
Download sequence Send
to blast |
MENSQSQGKN KKKRLTQDQV RQLEKCFTMN KKLEPDLKLQ LSNQLGLPQR QVAVWFQNKR 60
ARFKTQSLEV QHCTLQSKHE AALSDKAKLE HQVQFLQDEL KRARNQLALF TNQDSPVDNS 120
NLGSCDEDHD DQVVVFDELY ACFVSNGHGS SSTSWV
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:16055682}. |
| Functional Description ? help
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| Source |
Description |
| TAIR | Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB007644 | 0.0 | AB007644.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K19P17. |
| GenBank | AK229211 | 0.0 | AK229211.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-49-M21. |
| GenBank | BT015927 | 0.0 | BT015927.1 Arabidopsis thaliana At5g53980 mRNA, complete cds. |
| GenBank | BT021920 | 0.0 | BT021920.1 Arabidopsis thaliana At5g53980 gene, complete cds. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Henriksson E, et al.
Homeodomain leucine zipper class I genes in Arabidopsis. Expression patterns and phylogenetic relationships.
Plant Physiol., 2005. 139(1): p. 509-18
[PMID:16055682] - Oono Y, et al.
Monitoring expression profiles of Arabidopsis genes during cold acclimation and deacclimation using DNA microarrays.
Funct. Integr. Genomics, 2006. 6(3): p. 212-34
[PMID:16463051] - Che P,Lall S,Nettleton D,Howell SH
Gene expression programs during shoot, root, and callus development in Arabidopsis tissue culture.
Plant Physiol., 2006. 141(2): p. 620-37
[PMID:16648215] - Fleury D, et al.
The Arabidopsis thaliana homolog of yeast BRE1 has a function in cell cycle regulation during early leaf and root growth.
Plant Cell, 2007. 19(2): p. 417-32
[PMID:17329565] - Kleine T,Kindgren P,Benedict C,Hendrickson L,Strand A
Genome-wide gene expression analysis reveals a critical role for CRYPTOCHROME1 in the response of Arabidopsis to high irradiance.
Plant Physiol., 2007. 144(3): p. 1391-406
[PMID:17478635] - Xu K, et al.
A genome-wide transcriptome profiling reveals the early molecular events during callus initiation in Arabidopsis multiple organs.
Genomics, 2012. 100(2): p. 116-24
[PMID:22664253] - Markakis MN, et al.
Identification of genes involved in the ACC-mediated control of root cell elongation in Arabidopsis thaliana.
BMC Plant Biol., 2012. 12: p. 208
[PMID:23134674]
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