 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
AT5G53290.1 |
| Common Name | CRF3, ERF065, K19E1.9 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
ERF |
| Protein Properties |
Length: 354aa MW: 40100.2 Da PI: 4.2916 |
| Description |
cytokinin response factor 3 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 62.7 | 8.2e-20 | 123 | 173 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
++++GVr+++ +g+W+AeIrdp + r+r++lg+f taeeAa +++a+ +l+g
AT5G53290.1 123 KKFRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFETAEEAAVVYDNAAIRLRG 173
59********.**********743...5*************************99 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009736 | Biological Process | cytokinin-activated signaling pathway |
| GO:0009873 | Biological Process | ethylene-activated signaling pathway |
| GO:0042991 | Biological Process | transcription factor import into nucleus |
| GO:0048825 | Biological Process | cotyledon development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005737 | Cellular Component | cytoplasm |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005515 | Molecular Function | protein binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MDEYIDFRPL KYTEHKTSMT KYTKKSSEKL SGGKSLKKVS ICYTDPDATD SSSDEDEEDF 60
LFPRRRVKRF VNEITVEPSC NNVVTGVSMK DRKRLSSSSD ETQSPASSRQ RPNNKVSVSG 120
QIKKFRGVRQ RPWGKWAAEI RDPEQRRRIW LGTFETAEEA AVVYDNAAIR LRGPDALTNF 180
SIPPQEEEEE EEPEPVIEEK PVIMTTPTPT TSSSESTEED LQHLSSPTSV LNHRSEEIQQ 240
VQQPFKSAKP EPGVSNAPWW HTGFNTGLGE SDDSFPLDTP FLDNYFNESP PEMSIFDQPM 300
DQIFCENDDI FNDMLFLGGE TMNIEDELTS SSIKDMGSTF SDFDDSLISD LLVA
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| TAIR | encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. |
| UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
| Function -- GeneRIF ? help
Back to Top |
- CRFs represent a missing cross-talk component that fine-tunes auxin transport capacity downstream of cytokinin signalling to control plant development via transcriptional regulation of PIN-FORMED auxin transporters..
[PMID: 26541513] - Results suggest that CRF2 and CRF3 respond to cold via TCS-dependent and TCS-independent pathways and control LR initiation and development, contributing to LR adaptation to cold stress.
[PMID: 27432872]
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB013388 | 0.0 | AB013388.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19E1. |
| GenBank | AY560878 | 0.0 | AY560878.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g53290) mRNA, complete cds. |
| GenBank | BT020244 | 0.0 | BT020244.1 Arabidopsis thaliana At5g53290 gene, complete cds. |
| GenBank | BT021136 | 0.0 | BT021136.1 Arabidopsis thaliana At5g53290 gene, complete cds. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Lee BH,Henderson DA,Zhu JK
The Arabidopsis cold-responsive transcriptome and its regulation by ICE1.
Plant Cell, 2005. 17(11): p. 3155-75
[PMID:16214899] - Nakano T,Suzuki K,Fujimura T,Shinshi H
Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
Plant Physiol., 2006. 140(2): p. 411-32
[PMID:16407444] - Rashotte AM, et al.
A subset of Arabidopsis AP2 transcription factors mediates cytokinin responses in concert with a two-component pathway.
Proc. Natl. Acad. Sci. U.S.A., 2006. 103(29): p. 11081-5
[PMID:16832061] - Osuna D, et al.
Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings.
Plant J., 2007. 49(3): p. 463-91
[PMID:17217462] - Day RC,Herridge RP,Ambrose BA,Macknight RC
Transcriptome analysis of proliferating Arabidopsis endosperm reveals biological implications for the control of syncytial division, cytokinin signaling, and gene expression regulation.
Plant Physiol., 2008. 148(4): p. 1964-84
[PMID:18923020] - Oh E, et al.
Genome-wide analysis of genes targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during seed germination in Arabidopsis.
Plant Cell, 2009. 21(2): p. 403-19
[PMID:19244139] - Cutcliffe JW,Hellmann E,Heyl A,Rashotte AM
CRFs form protein-protein interactions with each other and with members of the cytokinin signalling pathway in Arabidopsis via the CRF domain.
J. Exp. Bot., 2011. 62(14): p. 4995-5002
[PMID:21705390] - Xu K, et al.
A genome-wide transcriptome profiling reveals the early molecular events during callus initiation in Arabidopsis multiple organs.
Genomics, 2012. 100(2): p. 116-24
[PMID:22664253] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Jin J, et al.
An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors.
Mol. Biol. Evol., 2015. 32(7): p. 1767-73
[PMID:25750178] - Šimášková M, et al.
Cytokinin response factors regulate PIN-FORMED auxin transporters.
Nat Commun, 2015. 6: p. 8717
[PMID:26541513] - Raines T, et al.
The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
Plant J., 2016. 85(1): p. 134-47
[PMID:26662515] - Jeon J,Cho C,Lee MR,Van Binh N,Kim J
CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
Plant Cell, 2016. 28(8): p. 1828-43
[PMID:27432872]
|
