PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT5G49620.2 | ||||||||
Common Name | AtMYB78, MYB78 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 321aa MW: 37114.3 Da PI: 5.0004 | ||||||||
Description | myb domain protein 78 | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 28 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+ l+++++ +G g+W++ ar+ ++Rt+k+c++rw++yl AT5G49620.2 28 RGPWTVEEDLELINYIASHGEGRWNSLARCAELKRTGKSCRLRWLNYL 75 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.9 | 1.3e-14 | 81 | 138 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT.............-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.............tWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l++++++++G+ +W++Ia++++ gRt++++k++w++ AT5G49620.2 81 RGNITLEEQLLILELHTRWGNSnefdhkfssscedRWSKIAQYLP-GRTDNEIKNYWRT 138 7999****************99***********************.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.803 | 23 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.78E-26 | 25 | 136 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-15 | 27 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-16 | 28 | 75 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-22 | 29 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.83E-11 | 30 | 75 | No hit | No description |
PROSITE profile | PS51294 | 11.27 | 80 | 144 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-10 | 80 | 142 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-12 | 81 | 138 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-19 | 83 | 143 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.23E-6 | 114 | 138 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 321 aa Download sequence Send to blast |
MGDKGRSLKI NKNMEEFTKV EEEMDVRRGP WTVEEDLELI NYIASHGEGR WNSLARCAEL 60 KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHTRWG NSNEFDHKFS SSCEDRWSKI 120 AQYLPGRTDN EIKNYWRTRV QKHAKQLKCD VNSQQFKDTM KYLWMPRLVE RIQAASIGSV 180 SMSSCVTTSS DQFVINNNNT NNVDNLALMS NPNGYITPDN SSVAVSPVSD LTECQVSSEV 240 WKIGQDENLV DPKMTSPNYM DNSSGLLNGD FTKMQDQSDL NWFENINGMV PNYSDSFWNI 300 GNDEDFWLLQ QHQQVHDNGS F |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-21 | 25 | 136 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
Genevisible | 248618_at | 0.0 | ||||
Expression Atlas | AT5G49620 | - | ||||
AtGenExpress | AT5G49620 | - | ||||
ATTED-II | AT5G49620 | - |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
TAIR | Member of the R2R3 factor gene family. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT5G49620.2 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Regulation -- Hormone ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hormone | |||||
AHD | abscisic acid |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT5G49620 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB023033 | 0.0 | AB023033.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K6M13. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001190502.1 | 0.0 | myb domain protein 78 | ||||
Swissprot | Q9FGY3 | 0.0 | MYB78_ARATH; Transcription factor MYB78 | ||||
TrEMBL | D7MPC7 | 1e-178 | D7MPC7_ARALL; AtMYB78 | ||||
STRING | AT5G49620.2 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 | Representative plant | OGRP5 | 17 | 1784 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT5G49620.2 |
Entrez Gene | 835024 |
iHOP | AT5G49620 |
wikigenes | AT5G49620 |