PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G49420.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 334aa    MW: 37396.5 Da    PI: 4.1939
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G49420.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.11.1e-082253940
                 HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
       SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviif 40
                   vt +kRr+g+  KA+ L+ L da++a++  
  AT5G49420.1 22 LRVTCTKRREGLYSKASQLCLLSDAQIAILAT 53
                 579*************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.1E-8669IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.049651IPR002100Transcription factor, MADS-box
CDDcd002664.23E-23786No hitNo description
SuperFamilySSF554551.7E-13880IPR002100Transcription factor, MADS-box
PfamPF003199.0E-101656IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020093anatomyantipodal cell
PO:0025195anatomypollen tube cell
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MVKKGGTKRK IAIETIQKRD SLRVTCTKRR EGLYSKASQL CLLSDAQIAI LATPPSSESN  60
VSFYSFGHSS VDAVVSAFLS GQRPVPKDNK ETREDVGICL TRNNLGLGFW WNDESLARSE  120
NPQEISEAID SMRTLLRNLK ELRADEALAC NQAFVNDRED LKNNDKCDFV SDHETHDQTL  180
ILQSASPICC IPENLNEITQ EPNQTLNIQS STSAICCVPD NSPENFNEIT EEQDQIRSIC  240
ETFCVMDNNA ALPEMNLDYD QDIGFDTPFE SALNDWFSDN TTHQEISASI LNAVVDDQVS  300
VDLTPFSYFQ RCLDGDNLRF SDCFKDFANT ISAL
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO425684160.0
Genevisible248602_s_at1e-149
Expression AtlasAT5G49420-
AtGenExpressAT5G49420-
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G49420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT5G65330
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G49420
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0230340.0AB023034.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K7J8.
GenBankAY1412390.0AY141239.1 Arabidopsis thaliana MADS-box protein AGL84 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ4470560.0DQ447056.1 Arabidopsis thaliana clone pENTR221-At5g49420 MADS-box protein (At5g49420) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199753.30.0MADS-box transcription factor family protein
SwissprotQ9C6335e-46AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLA0MFN00.0A0MFN0_ARATH; Uncharacterized protein (Fragment)
TrEMBLQ7X9H50.0Q7X9H5_ARATH; MADS-box protein
STRINGAT5G49420.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Representative plantOGRP1084328
Publications ? help Back to Top
  1. De Bodt S, et al.
    Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.
    J. Mol. Evol., 2003. 56(5): p. 573-86
    [PMID:12698294]
  2. Parenicová L, et al.
    Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
    Plant Cell, 2003. 15(7): p. 1538-51
    [PMID:12837945]
  3. Kofuji R, et al.
    Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses.
    Mol. Biol. Evol., 2003. 20(12): p. 1963-77
    [PMID:12949148]
  4. de Folter S, et al.
    Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
    Plant Cell, 2005. 17(5): p. 1424-33
    [PMID:15805477]
  5. Pina C,Pinto F,Feij
    Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation.
    Plant Physiol., 2005. 138(2): p. 744-56
    [PMID:15908605]
  6. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]
  7. Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC
    An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis.
    Plant Physiol., 2010. 154(1): p. 287-300
    [PMID:20631316]
  8. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]