PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G49200.1
Common NameK21P3.7, ZFWD4
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 419aa    MW: 46069.6 Da    PI: 8.6455
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G49200.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74e-0895114626
                  -SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                  C+++   G Ck+G++C+F H+
  AT5G49200.1  95 CKYWKD-GKCKRGEQCQFLHS 114
                  ******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5389116IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-590115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-791114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-791114IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-595114IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.65E-47115171IPR017986WD40-repeat-containing domain
SMARTSM003200.001120159IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.104.4E-46122413IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5008213.182127168IPR001680WD40 repeat
PROSITE profilePS5029424.152127419IPR017986WD40-repeat-containing domain
PfamPF117158.9E-6142175No hitNo description
PROSITE patternPS006780146160IPR019775WD40 repeat, conserved site
PRINTSPR003203.0E-7146160IPR020472G-protein beta WD-40 repeat
SMARTSM0032087201238IPR001680WD40 repeat
SuperFamilySSF509781.65E-47211416IPR017986WD40-repeat-containing domain
SMARTSM003202.5E-6247284IPR001680WD40 repeat
PfamPF004007.7E-6249284IPR001680WD40 repeat
PROSITE profilePS5008213.048254293IPR001680WD40 repeat
PRINTSPR003203.0E-7271285IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780271285IPR019775WD40 repeat, conserved site
SMARTSM003203.7E-5287324IPR001680WD40 repeat
PfamPF004000.0019289323IPR001680WD40 repeat
PRINTSPR003203.0E-7311325IPR020472G-protein beta WD-40 repeat
SMARTSM00320260330372IPR001680WD40 repeat
SMARTSM003206.7375412IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDYKAPRRYY SHGVVARQQD FATDIVTRRR PYVPYDRPNK FSRSLVWTSK EYKSPEGNNM  60
PRTNDVSPKP PVLGLARKNA ACGPMRSSSL RKWVCKYWKD GKCKRGEQCQ FLHSWSCFPG  120
LAMVASLEGH NKELKGIALP EGSDKLFSVS IDGTLRVWDC NSGQCVHSIN LDAEAGSLIS  180
EGPWVFLGLP NAIKAFNVQT SQDLHLQAAG VVGQVNAMTI ANGMLFAGTS SGSILVWKAT  240
TDSESDPFKY LTSLEGHSGE VTCFAVGGQM LYSGSVDKTI KMWDLNTLQC IMTLKQHTGT  300
VTSLLCWDKC LISSSLDGTI KVWAYSENGI LKVVQTRRQE QSSVHALSGM HDAEAKPIIF  360
CSYQNGTVGI FDLPSFQERG RMFSTHTIAT LTIGPQGLLF SGDESGNLRV WTLAAGNKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A8e-201154166322Tako8
6g6n_A8e-201154166322Tako8
6g6n_B8e-201154166322Tako8
6g6n_C8e-201154166322Tako8
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184230000.0
Genevisible249319_s_at1e-121
Expression AtlasAT5G49200-
AtGenExpressAT5G49200-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G49200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G49200
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168720.0AB016872.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21P3.
GenBankAJ2520660.0AJ252066.1 Arabidopsis thaliana partial mRNA for zfwd4 protein (zfwd4 gene).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199731.10.0WD-40 repeat family protein / zfwd4 protein (ZFWD4)
SwissprotQ9FE910.0C3H62_ARATH; Zinc finger CCCH domain-containing protein 62
TrEMBLA0A178UC980.0A0A178UC98_ARATH; Uncharacterized protein
STRINGAT5G49200.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Representative plantOGRP10651624
Publications ? help Back to Top
  1. Terol J,Bargues M,P
    ZFWD: a novel subfamily of plant proteins containing a C3H zinc finger and seven WD40 repeats.
    Gene, 2000. 260(1-2): p. 45-53
    [PMID:11137290]
  2. Zhang Y,Wu Y,Liu Y,Han B
    Computational identification of 69 retroposons in Arabidopsis.
    Plant Physiol., 2005. 138(2): p. 935-48
    [PMID:15923328]
  3. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  4. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  5. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]