|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
AT5G47140.1 |
Common Name | GATA27, K14A3.9 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
Family |
GATA |
Protein Properties |
Length: 470aa MW: 52601.1 Da PI: 6.3626 |
Description |
GATA transcription factor 27 |
Gene Model |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GATA | 50.4 | 3.1e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+
AT5G47140.1 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41
****************88888***********997 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0030154 | Biological Process | cell differentiation |
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
GO:0005634 | Cellular Component | nucleus |
GO:0005667 | Cellular Component | transcription factor complex |
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding |
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
GO:0003682 | Molecular Function | chromatin binding |
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 470 aa
Download sequence Send
to blast |
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLVNYTPLHA RAEGDETEIE 60 DHRTQTVMIK GMSLNKKIPK RKPYQENFTV KRANLEFHTG FKRKALDEEA SNRSSSGSVV 120 SNSESCAQSN AWDSTFPCKR RTCVGRPKAA SSVEKLTKDL YTILQEQQSS CLSGTSEEDL 180 LFENETPMLL GHGSVLMRDP HSGAREEESE ASSLLVESSK SSSVHSVKFG GKAMKQEQVK 240 RSKSQVLGRH SSLLCSIDLK DVFNFDEFIE NFTEEEQQKL MKLLPQVDSV DRPDSLRSMF 300 ESSQFKENLS LFQQLVADGV FETNSSYAKL EDIKTLAKLA LSDPNKSHLL ESYYMLKRRE 360 IEDCVTTTSR VSSLSPSNNN SLVTIERPCE SLNQNFSETR GVMRSPKEVM KIRSKHTEEN 420 LENSVSSFKP VSCGGPLVFS YEDNDISDQD LLLDVPSNGS FPQAELLNMI
|
Functional Description ? help
Back to Top |
Source |
Description |
TAIR | Encodes a member of the GATA factor family of zinc finger transcription factors. |
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AK226642 | 0.0 | AK226642.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-38-K02. |
Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Reyes JC,Muro-Pastor MI,Florencio FJ
The GATA family of transcription factors in Arabidopsis and rice. Plant Physiol., 2004. 134(4): p. 1718-32 [PMID:15084732] - Bi YM, et al.
Genetic analysis of Arabidopsis GATA transcription factor gene family reveals a nitrate-inducible member important for chlorophyll synthesis and glucose sensitivity. Plant J., 2005. 44(4): p. 680-92 [PMID:16262716] - Manfield IW,Devlin PF,Jen CH,Westhead DR,Gilmartin PM
Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family. Plant Physiol., 2007. 143(2): p. 941-58 [PMID:17208962]
|