PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT5G43175.1 | ||||||||
Common Name | BHLH139, EN116, MMG4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 223aa MW: 25076.1 Da PI: 7.0594 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.3 | 2e-11 | 148 | 188 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ +L++l+P+ +K++ +++Le Av+Y+k Lq AT5G43175.1 148 RKRRERINDRLKTLQSLVPNG-----TKVDISTMLEDAVHYVKFLQ 188 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.831 | 138 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-14 | 143 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-12 | 144 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.1E-13 | 144 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.57E-12 | 147 | 192 | No hit | No description |
Pfam | PF00010 | 7.6E-9 | 148 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MENEAFVDGE LESLLGMFNF DQCSSNESSF CNAPNETDVF SSDDFFPFGT ILQSNYAAVL 60 DGSNHQTNRN VDSRQDLLKP RKKQKLSSES NLVTEPKTAW RDGQSLSSYN SSDDEKALGL 120 VSNTSKSLKR KAKANRGIAS DPQSLYARKR RERINDRLKT LQSLVPNGTK VDISTMLEDA 180 VHYVKFLQLQ IKLLSSEDLW MYAPLAHNGL NMGLHHNLLS RLI |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 128 | 150 | KRKAKANRGIASDPQSLYARKRR |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 145361176 | 0.0 | ||||
Expression Atlas | AT5G43175 | - | ||||
AtGenExpress | AT5G43175 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT5G43175.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT5G43175 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB023030 | 1e-123 | AB023030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24F5. | |||
GenBank | CP002688 | 1e-123 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_680385.1 | 1e-165 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q3E7L7 | 1e-166 | BH139_ARATH; Transcription factor bHLH139 | ||||
TrEMBL | A0A178UKI5 | 1e-163 | A0A178UKI5_ARATH; Uncharacterized protein | ||||
STRING | AT5G43175.1 | 1e-164 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4132 | 22 | 57 | Representative plant | OGRP1048 | 14 | 54 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT5G43175.1 |
Entrez Gene | 834335 |
iHOP | AT5G43175 |
wikigenes | AT5G43175 |
Publications ? help Back to Top | |||
---|---|---|---|
|