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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT5G43170.1 |
| Common Name | AZF3, MMG4.21, ZF3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
C2H2 |
| Protein Properties |
Length: 193aa MW: 21019.6 Da PI: 8.865 |
| Description |
zinc-finger protein 3 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.4 | 0.00023 | 75 | 97 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
ykC+ C k+Fs+ L H +H
AT5G43170.1 75 YKCGVCYKTFSSYQALGGHKASH 97
9***********99999998887 PP
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| 2 | zf-C2H2 | 11.9 | 0.00071 | 118 | 137 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++C+ CgksF + L H
AT5G43170.1 118 HVCSVCGKSFATGQALGGHK 137
79********9988776665 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009409 | Biological Process | response to cold |
| GO:0010200 | Biological Process | response to chitin |
| GO:0042538 | Biological Process | hyperosmotic salinity response |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 193 aa
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MALEALNSPR LVEDPLRFNG VEQWTKCKKR SKRSRSDLHH NHRLTEEEYL AFCLMLLARD 60
GGDLDSVTVA EKPSYKCGVC YKTFSSYQAL GGHKASHRSL YGGGENDKST PSTAVKSHVC 120
SVCGKSFATG QALGGHKRCH YDGGVSNSEG VGSTSHVSSS SHRGFDLNII PVQGFSPDDE 180
VMSPMATKKP RLK
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755}. |
| Functional Description ? help
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| Source |
Description |
| TAIR | Encodes zinc finger protein. mRNA levels are elevated in response to high salinity and low temperature. The protein is localized to the nucleus and acts as a transcriptional repressor. |
| UniProt | Transcriptional repressor probably involved in abiotic stress responses. Binds DNA in a sequence-specific manner and can repress the transactivation activity of other transcription factors. {ECO:0000269|PubMed:15333755}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA), ethylene, salt, cold and heat. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB008267 | 0.0 | AB008267.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMG4. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
| Publications
? help Back to Top |
- Sakamoto H,Araki T,Meshi T,Iwabuchi M
Expression of a subset of the Arabidopsis Cys(2)/His(2)-type zinc-finger protein gene family under water stress.
Gene, 2000. 248(1-2): p. 23-32
[PMID:10806347] - Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Englbrecht CC,Schoof H,B
Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
BMC Genomics, 2004. 5(1): p. 39
[PMID:15236668] - Sakamoto H, et al.
Arabidopsis Cys2/His2-type zinc-finger proteins function as transcription repressors under drought, cold, and high-salinity stress conditions.
Plant Physiol., 2004. 136(1): p. 2734-46
[PMID:15333755] - Miao Y,Laun T,Zimmermann P,Zentgraf U
Targets of the WRKY53 transcription factor and its role during leaf senescence in Arabidopsis.
Plant Mol. Biol., 2004. 55(6): p. 853-67
[PMID:15604721] - Libault M,Wan J,Czechowski T,Udvardi M,Stacey G
Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor.
Mol. Plant Microbe Interact., 2007. 20(8): p. 900-11
[PMID:17722694] - Rossel JB, et al.
Systemic and intracellular responses to photooxidative stress in Arabidopsis.
Plant Cell, 2007. 19(12): p. 4091-110
[PMID:18156220] - Dortay H, et al.
Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana.
J. Proteome Res., 2008. 7(9): p. 3649-60
[PMID:18642946] - Kodaira KS, et al.
Arabidopsis Cys2/His2 zinc-finger proteins AZF1 and AZF2 negatively regulate abscisic acid-repressive and auxin-inducible genes under abiotic stress conditions.
Plant Physiol., 2011. 157(2): p. 742-56
[PMID:21852415] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Lumba S, et al.
A mesoscale abscisic acid hormone interactome reveals a dynamic signaling landscape in Arabidopsis.
Dev. Cell, 2014. 29(3): p. 360-72
[PMID:24823379]
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