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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT5G42520.2 |
| Common Name | ATBPC6, BBR/BPC6, BPC6, MDH9.22 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
BBR-BPC |
| Protein Properties |
Length: 338aa MW: 37680.6 Da PI: 9.6471 |
| Description |
basic pentacysteine 6 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 405.2 | 8.1e-124 | 1 | 338 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkgyye.pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.. 92
mdd g+re r+k+ + ++ +s+k q+ms+iaerda+i+ernla+sekkaavaerdmaflqrd+a+aern+a++erd++l+al+++ens++
AT5G42520.2 1 MDDGGHREngRHKAAVQgQHqPSMK-----QVMSIIAERDAAIQERNLAISEKKAAVAERDMAFLQRDTAIAERNNAIMERDSALTALQYRENSMVta 93
9*****9889999955424457888.....****************************************************************999* PP
GAGA_bind 93 .....salpvgvqvlsgtksidslqqlse......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvk 179
sa+p+g+q+++g+k++++ +++++ pql+++a+e+re+e ++ lp++ a ++ e++k+k+++r +pk++++++++k+++k+++kvk
AT5G42520.2 94 paanmSACPPGCQISRGVKHLHHPHMHHHhqqhhiPQLTENAYETREMEPNDGLPTSPPAGSTLESAKPKRGKR-VNPKATTQTAANKRGPKNQRKVK 190
***999*****************99976679999************************************7766.5799******************* PP
GAGA_bind 180 kesad.er.......................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrg 252
kes+d + sk+++ks+++ +ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPLP+ +++r+
AT5G42520.2 191 KESEDdLNkimfvktthdytdedsskhiligSKSDWKSQEMvGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRH 288
***985448********************************88******************************************************* PP
GAGA_bind 253 aRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+
AT5G42520.2 289 ARVGGRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 338
************************88***********************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MDDGGHRENG RHKAAVQGQH QPSMKQVMSI IAERDAAIQE RNLAISEKKA AVAERDMAFL 60
QRDTAIAERN NAIMERDSAL TALQYRENSM VTAPAANMSA CPPGCQISRG VKHLHHPHMH 120
HHHQQHHIPQ LTENAYETRE MEPNDGLPTS PPAGSTLESA KPKRGKRVNP KATTQTAANK 180
RGPKNQRKVK KESEDDLNKI MFVKTTHDYT DEDSSKHILI GSKSDWKSQE MVGLNQVVYD 240
ETTMPPPVCS CTGVLRQCYK WGNGGWQSSC CTTTLSMYPL PALPNKRHAR VGGRKMSGSA 300
FNKLLSRLAA EGHHDLSNPV DLKDHWAKHG TNRYITIK
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Function -- GeneRIF ? help
Back to Top |
- characterization of AtBPC6
[PMID: 21347358] - Arabidopsis (Arabidopsis thaliana) GAGA-motif binding factor protein basic pentacysteine6 (BPC6) interacts with like heterochromatin protein1 (LHP1), a PRC1 component, and associates with vernalization2 (VRN2), a PRC2 component, in vivo.
[PMID: 26025051]
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| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK221752 | 0.0 | AK221752.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-54-A10. |
| GenBank | AK227246 | 0.0 | AK227246.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL11-01-O04. |
| GenBank | BT024874 | 0.0 | BT024874.1 Arabidopsis thaliana At5g42520 mRNA, complete cds. |
| GenBank | EF123108 | 0.0 | EF123108.1 Arabidopsis thaliana GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
| Publications
? help Back to Top |
- Santi L, et al.
The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3.
Plant J., 2003. 34(6): p. 813-26
[PMID:12795701] - Meister RJ, et al.
Definition and interactions of a positive regulatory element of the Arabidopsis INNER NO OUTER promoter.
Plant J., 2004. 37(3): p. 426-38
[PMID:14731261] - Wanke D, et al.
Alanine zipper-like coiled-coil domains are necessary for homotypic dimerization of plant GAGA-factors in the nucleus and nucleolus.
PLoS ONE, 2011. 6(2): p. e16070
[PMID:21347358] - Monfared MM, et al.
Overlapping and antagonistic activities of BASIC PENTACYSTEINE genes affect a range of developmental processes in Arabidopsis.
Plant J., 2011. 66(6): p. 1020-31
[PMID:21435046] - Hecker A, et al.
The Arabidopsis GAGA-Binding Factor BASIC PENTACYSTEINE6 Recruits the POLYCOMB-REPRESSIVE COMPLEX1 Component LIKE HETEROCHROMATIN PROTEIN1 to GAGA DNA Motifs.
Plant Physiol., 2015. 168(3): p. 1013-24
[PMID:26025051]
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