PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 330aa MW: 37729.5 Da PI: 8.1847

Description

AGAMOUS-like 75

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT5G41200.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	78	6.9e-25	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +++++s + +++s+R+++i+KKA+EL++LCd+e++vi+++++g+l+++++ AT5G41200.1 10 SSSSYSLAFTSLSNRLETIFKKASELCTLCDIEACVIYYGPDGELKTWPK 59 799*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.1E-4	1	60	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.7E-14	19	57	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.52E-19	19	85	No hit	No description
PROSITE profile	PS50066	9.699	19	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.31E-14	20	93	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0020090	anatomy	embryo sac central cell

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MTMRSSSPSS SSSYSLAFTS LSNRLETIFK KASELCTLCD IEACVIYYGP DGELKTWPKE 60 KEKVRDIALR YSLLNEALRR KKSVNLHGFL NKKKNKGLKN PNKKMKTSLK NVNILKYPLA 120 DHYPPDQVSP LIQSLELHVS KFQERLRFLE SQKQNQTKPD HQSLTPSSLN HYTQSLNPSQ 180 FSLFMYNHGD NTLSQIPVSA SNFNQDYFSA LLEESELKNQ LMKPEICGYD QNQNMSMGDI 240 TNNKFQDPCV SNKEAVQESV NNFGLNQLMY KEFYGCDQNM SMGNINSNSF QNPCVSNTQH 300 YSAVEESVKN PWLNQLMQNE LYGYGYAGFC

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	18422070	0.0
Genevisible	249419_s_at	1e-102
Expression Atlas	AT5G41200	-
AtGenExpress	AT5G41200	-

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT5G41200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Interaction ? help Back to Top
Source	Intact With
IntAct	Search Q9FLL0

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT5G41200

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB010072	0.0	AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6.
GenBank	BT030016	0.0	BT030016.1 Arabidopsis thaliana At5g41200 mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_198936.1	0.0	AGAMOUS-like 75
Swissprot	Q9FLL0	0.0	AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBL	A0A178UDM5	0.0	A0A178UDM5_ARATH; AGL75
STRING	AT5G41200.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126
Representative plant	OGRP6766	2	18

Link Out ? help Back to Top
Phytozome	AT5G41200.1
Entrez Gene	834122
iHOP	AT5G41200
wikigenes	AT5G41200

Publications ? help Back to Top
De Bodt S, et al. Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants. J. Mol. Evol., 2003. 56(5): p. 573-86 [PMID:12698294] Parenicová L, et al. Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Plant Cell, 2003. 15(7): p. 1538-51 [PMID:12837945] Kofuji R, et al. Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses. Mol. Biol. Evol., 2003. 20(12): p. 1963-77 [PMID:12949148] de Folter S, et al. Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. Plant Cell, 2005. 17(5): p. 1424-33 [PMID:15805477] Popescu SC, et al. Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays. Proc. Natl. Acad. Sci. U.S.A., 2007. 104(11): p. 4730-5 [PMID:17360592] Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis. Plant Physiol., 2010. 154(1): p. 287-300 [PMID:20631316] Li HJ, et al. Arabidopsis CBP1 Is a Novel Regulator of Transcription Initiation in Central Cell-Mediated Pollen Tube Guidance. Plant Cell, 2015. 27(10): p. 2880-93 [PMID:26462908] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]