PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

MYB_related

Protein Properties

Length: 588aa MW: 68195.6 Da PI: 8.4138

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT5G41020.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.9	4.8e-08	380	419	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+e+ el + k +G++ Wkt a mg + +k++k+ w+ AT5G41020.1 380 IWTKEDIELVMEFQKTHGND-WKTLADAMG--KHRKHVKDAWR 419 5*****************.******9..78999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.3E-6	303	373	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-4	304	375	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	4.983	307	373	IPR017877	Myb-like domain
SMART	SM00717	2.2	377	424	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.446	378	420	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.9E-5	378	419	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-6	379	438	IPR009057	Homeodomain-like
Pfam	PF13921	1.6E-8	381	439	No hit	No description
PROSITE profile	PS50090	6.388	423	491	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	8.8E-4	426	491	IPR009057	Homeodomain-like
SMART	SM00717	53	427	493	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.32E-5	471	545	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.549	493	546	IPR017877	Myb-like domain
SMART	SM00717	71	497	548	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006357	Biological Process	regulation of transcription from RNA polymerase II promoter
GO:0030154	Biological Process	cell differentiation
GO:0005634	Cellular Component	nucleus
GO:0000981	Molecular Function	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	Molecular Function	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000293	anatomy	guard cell

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence Send to blast
MAEEKKNKKK KSDAKVDSEE TGEEFISEHS SMKDKEKKRK KNKRENKDGF TGEDMEITGR 60 ESEKLGDEVF IVKKKKKSKK PIRIDSEAVD AVKKKSKKRS KETKADSEAE DDGVEKKSKE 120 KSKETKVDSE AHDGVKRKKK KSKKESGGDV IENTESSKVS DKKKGKRKRD DTDLGAEENI 180 DKEVKRKNNK KKPSVDSDVE DINLDSTNDG KKKRKKKKQS EDSETEENGL NSTKDAKKRR 240 KKKKKKKQSE VSEAEEKSDK SDEDLTTPST SSKRVKFSDQ VEFFPSDDDE GTEDDDEEEV 300 KVVRGKRFTK EEDEMVKNAV LEYIDNHALG DEGIKMVMEC KAYPQLKGCW KEITSALPWR 360 TYNSVYHRAH TIFEAGSQGI WTKEDIELVM EFQKTHGNDW KTLADAMGKH RKHVKDAWRR 420 GRLAGKKKGH WMREEYQNLF DLVNKDLRMK AFKEKHSKHG MLKDNIPWMA ISDVLETRDH 480 VTCCQKWYEQ LISPMVAKGM WANVDDYRLL EELLKLDAAC IDDVDWDNLL ENRDGEACRK 540 RWNQMIIHIG VPKSKTFAEQ VEILSDRYCP DIAEDREDFD NRPYDPED

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence Send to blast

MAEEKKNKKK KSDAKVDSEE TGEEFISEHS SMKDKEKKRK KNKRENKDGF TGEDMEITGR  60
ESEKLGDEVF IVKKKKKSKK PIRIDSEAVD AVKKKSKKRS KETKADSEAE DDGVEKKSKE  120
KSKETKVDSE AHDGVKRKKK KSKKESGGDV IENTESSKVS DKKKGKRKRD DTDLGAEENI  180
DKEVKRKNNK KKPSVDSDVE DINLDSTNDG KKKRKKKKQS EDSETEENGL NSTKDAKKRR  240
KKKKKKKQSE VSEAEEKSDK SDEDLTTPST SSKRVKFSDQ VEFFPSDDDE GTEDDDEEEV  300
KVVRGKRFTK EEDEMVKNAV LEYIDNHALG DEGIKMVMEC KAYPQLKGCW KEITSALPWR  360
TYNSVYHRAH TIFEAGSQGI WTKEDIELVM EFQKTHGNDW KTLADAMGKH RKHVKDAWRR  420
GRLAGKKKGH WMREEYQNLF DLVNKDLRMK AFKEKHSKHG MLKDNIPWMA ISDVLETRDH  480
VTCCQKWYEQ LISPMVAKGM WANVDDYRLL EELLKLDAAC IDDVDWDNLL ENRDGEACRK  540
RWNQMIIHIG VPKSKTFAEQ VEILSDRYCP DIAEDREDFD NRPYDPED

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	215	KKRKK
2	236	240	KKRRK
3	236	241	KKRRKK
4	238	244	RRKKKKK
5	238	246	RRKKKKKKK
6	240	246	KKKKKKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
At.30257	0.0	cell culture\| flower

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	30693715	0.0
Expression Atlas	AT5G41020	-
AtGenExpress	AT5G41020	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT5G41020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT5G41020

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB010072	0.0	AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6.
GenBank	AY519653	0.0	AY519653.1 Arabidopsis thaliana MYB transcription factor (At5g41020) mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_198918.1	0.0	myb family transcription factor
TrEMBL	Q9FLM7	0.0	Q9FLM7_ARATH; Gb\|AAC33480.1
STRING	AT5G41020.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6327	25	37
Representative plant	OGRP5322	14	18

Link Out ? help Back to Top
Phytozome	AT5G41020.1
Entrez Gene	834104
iHOP	AT5G41020
wikigenes	AT5G41020

Publications ? help Back to Top
Yanhui C, et al. The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. Plant Mol. Biol., 2006. 60(1): p. 107-24 [PMID:16463103] Tran LS, et al. Co-expression of the stress-inducible zinc finger homeodomain ZFHD1 and NAC transcription factors enhances expression of the ERD1 gene in Arabidopsis. Plant J., 2007. 49(1): p. 46-63 [PMID:17233795]