PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G40220.1
Common NameAGL43
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 324aa    MW: 37007.6 Da    PI: 7.5389
Description AGAMOUS-like 43
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G40220.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.25.7e-251058250
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 +++ +s +++++s+R+++i+KKA+EL++LCd+e++vi+++++g+l++++
  AT5G40220.1 10 SSSAYSLASTSLSNRLETIFKKASELCTLCDIEACVIYYGPDGELKTWP 58
                 78899*******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-5160IPR002100Transcription factor, MADS-box
PfamPF003195.0E-141857IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.5731961IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-151994IPR002100Transcription factor, MADS-box
CDDcd002668.66E-192185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MTMRSSLPSS SSAYSLASTS LSNRLETIFK KASELCTLCD IEACVIYYGP DGELKTWPPE  60
REKVRDIALR YSQLNEALRR KKSVNLHGFL NKKKKNKGLK NTDKKRKTSL KKVNVLKYPL  120
ADHYPPDQVS PLIQSLELHV SKFHERLEFL ESRKQNETQP DHHSLASSSL NHQTQSLNPS  180
QFSLFMYNHG DNTLSQIPVS ASNFNQDYFS ALLEQSELKN QLMKQEICGN DQNQNMWMGN  240
ITNNNFQLPC VSVQESVNNF GLMHKEFYGC DHNMSVGNIN SNSCEHPCVS STQHYSAVEE  300
SVNNPWLNQL MQNELYGYGY ADFC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192106KKKNKGLKNTDKKRK
293105KKNKGLKNTDKKR
398106LKNTDKKRK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO425682110.0
Genevisible249419_s_at1e-102
Expression AtlasAT5G40220-
AtGenExpressAT5G40220-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G40220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT5G49420, AT1G46408, AT1G48150
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G40220
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0106990.0AB010699.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSN9.
GenBankAY1412230.0AY141223.1 Arabidopsis thaliana MADS-box protein AGL43 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198838.20.0AGAMOUS-like 43
SwissprotQ9FLL00.0AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLQ9FL100.0Q9FL10_ARATH; AGAMOUS-like 43
STRINGAT5G40220.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Representative plantOGRP6766218
Publications ? help Back to Top
  1. De Bodt S, et al.
    Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.
    J. Mol. Evol., 2003. 56(5): p. 573-86
    [PMID:12698294]
  2. Parenicová L, et al.
    Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
    Plant Cell, 2003. 15(7): p. 1538-51
    [PMID:12837945]
  3. Kofuji R, et al.
    Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses.
    Mol. Biol. Evol., 2003. 20(12): p. 1963-77
    [PMID:12949148]
  4. de Folter S, et al.
    Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
    Plant Cell, 2005. 17(5): p. 1424-33
    [PMID:15805477]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]