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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT5G40220.1 |
| Common Name | AGL43 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
M-type_MADS |
| Protein Properties |
Length: 324aa MW: 37007.6 Da PI: 7.5389 |
| Description |
AGAMOUS-like 43 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 78.2 | 5.7e-25 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
+++ +s +++++s+R+++i+KKA+EL++LCd+e++vi+++++g+l++++
AT5G40220.1 10 SSSAYSLASTSLSNRLETIFKKASELCTLCDIEACVIYYGPDGELKTWP 58
78899*******************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 324 aa
Download sequence Send
to blast |
MTMRSSLPSS SSAYSLASTS LSNRLETIFK KASELCTLCD IEACVIYYGP DGELKTWPPE 60
REKVRDIALR YSQLNEALRR KKSVNLHGFL NKKKKNKGLK NTDKKRKTSL KKVNVLKYPL 120
ADHYPPDQVS PLIQSLELHV SKFHERLEFL ESRKQNETQP DHHSLASSSL NHQTQSLNPS 180
QFSLFMYNHG DNTLSQIPVS ASNFNQDYFS ALLEQSELKN QLMKQEICGN DQNQNMWMGN 240
ITNNNFQLPC VSVQESVNNF GLMHKEFYGC DHNMSVGNIN SNSCEHPCVS STQHYSAVEE 300
SVNNPWLNQL MQNELYGYGY ADFC
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 92 | 106 | KKKNKGLKNTDKKRK |
| 2 | 93 | 105 | KKNKGLKNTDKKR |
| 3 | 98 | 106 | LKNTDKKRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB010699 | 0.0 | AB010699.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSN9. |
| GenBank | AY141223 | 0.0 | AY141223.1 Arabidopsis thaliana MADS-box protein AGL43 mRNA, complete cds. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
| Publications
? help Back to Top |
- De Bodt S, et al.
Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.
J. Mol. Evol., 2003. 56(5): p. 573-86
[PMID:12698294] - Parenicová L, et al.
Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
Plant Cell, 2003. 15(7): p. 1538-51
[PMID:12837945] - Kofuji R, et al.
Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses.
Mol. Biol. Evol., 2003. 20(12): p. 1963-77
[PMID:12949148] - de Folter S, et al.
Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
Plant Cell, 2005. 17(5): p. 1424-33
[PMID:15805477] - Zhang S, et al.
FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
Plant Physiol., 2018. 177(1): p. 285-299
[PMID:29523711]
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