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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT5G38740.1 |
| Common Name | AGL77 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
M-type_MADS |
| Protein Properties |
Length: 426aa MW: 48441 Da PI: 8.064 |
| Description |
AGAMOUS-like 77 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 80.1 | 1.5e-25 | 18 | 67 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+++++s +++++s+R+++i+KKA+EL++LCd+e++vi+++++g+l+++++
AT5G38740.1 18 SSSSYSLASTSLSNRLETIFKKASELCTLCDIEACVIYYGPDGELKTWPK 67
799*********************************************96 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 426 aa
Download sequence Send
to blast |
MTTIRSSPSS SRCSNSSSSS SYSLASTSLS NRLETIFKKA SELCTLCDIE ACVIYYGPDG 60
ELKTWPKERE KVRDIALRFN QLNEALRHKK SVNLHGFLNK KKKNKGLKNP NKKKKTSLKN 120
VNVLKYPLAD HYSPDQVSQL TQSLELNVSK FQERLRFLES QKQNETKPDH QSLTSISSLN 180
QSLNPSQFSL FMYNHGYNTL SQIPVSASNF NQDYISALLE QSELKSQIMK QEVCGYEQNM 240
CMSNHGDATL SQIPFSASNF NQDFSANNNF QHSFVSNTQD YYSVQKSVNN NYGLKNQLMK 300
HDLCGYEHNM CMSNHGDATF SQIPLSASNF NQDFSVSIQE ESGLMQQELC GYDQNQNMSM 360
GDITNNNFQV TCASVLESVN NFGLNQLMHK EFYGCHQNMS MGNINNNSFQ HPWVSNADHT 420
RRYKNL
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| Nucleic Localization
Signal ? help
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| No. |
Start |
End |
Sequence |
| 1 | 100 | 114 | KKKNKGLKNPNKKKK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB011478 | 0.0 | AB011478.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKD10. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
| Publications
? help Back to Top |
- De Bodt S, et al.
Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.
J. Mol. Evol., 2003. 56(5): p. 573-86
[PMID:12698294] - Parenicová L, et al.
Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
Plant Cell, 2003. 15(7): p. 1538-51
[PMID:12837945] - de Folter S, et al.
Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
Plant Cell, 2005. 17(5): p. 1424-33
[PMID:15805477] - Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC
An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis.
Plant Physiol., 2010. 154(1): p. 287-300
[PMID:20631316] - Zhang S, et al.
FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
Plant Physiol., 2018. 177(1): p. 285-299
[PMID:29523711]
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