PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G37415.1
Common NameAGL105
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 316aa    MW: 37288.5 Da    PI: 8.7363
Description AGAMOUS-like 105
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G37415.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.24.5e-13851112551
                  HHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  25 eELSvLCdaevaviifsstgklyeyss 51 
                  +EL++LCd+e++vi+++++g+l+++++
  AT5G37415.1  85 SELCILCDIEACVIYYGPDGELKTWPK 111
                  7************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.96E-985145IPR002100Transcription factor, MADS-box
PfamPF003191.5E-685109IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MRDPDIVQNT RSLILLRVLT HEKLIQSHRY FFVGWIHKNL SRFRRKIRRR FLHCDFSGFG  60
FFPRRFLFGF VLEKMDHLQE SFRGSELCIL CDIEACVIYY GPDGELKTWP KEREKVEDIA  120
LRYSQLNEAL RRKKSVTLYD FLNKKKDKTN LEKKAMITDN DDLKTCLKNV NVLKSPIADH  180
YFNDQISQLI QSLEPHVSKV QERIRFVESQ KHKETKLDHQ SLASIYSLNQ SLNPSQFTLF  240
LYNHGDNTMS QIPNMFMNNN NFQHSFVSNT QDYSALQESV NNNYGLMPNV LCGYDQNLFT  300
SDITNNNLLI DNSMYL
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible249419_s_at9e-43
Expression AtlasAT5G37415-
AtGenExpressAT5G37415-
Functional Description ? help Back to Top
Source Description
TAIREncodes a MADS-box gene AGL105 (AGAMOUS-LIKE 105). Note that previous reports (Plant Cell 2003,15:1538; PNAS 2003, 100:13407) have incorrectly named AT5G37420 as AGL105. Current nomenclature is based on Plant Cell 2003, 15:1538 where the GenBank accession number given for AGL105 is AY141227 (Supplemental Table 3), which corresponds to AT5G37415.
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G37415.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G37415
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0006070.0AP000607.2 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:T25O11.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_680360.20.0AGAMOUS-like 105
SwissprotQ9FIX01e-115AGL81_ARATH; Agamous-like MADS-box protein AGL81
TrEMBLB3H4N90.0B3H4N9_ARATH; AGAMOUS-like 105
STRINGAT5G37415.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Representative plantOGRP6766218
Publications ? help Back to Top
  1. Parenicová L, et al.
    Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
    Plant Cell, 2003. 15(7): p. 1538-51
    [PMID:12837945]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]