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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
AT5G35900.1 |
| Common Name | ASL27, LBD35, MIK22.21 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
LBD |
| Protein Properties |
Length: 206aa MW: 22816.2 Da PI: 6.2258 |
| Description |
LOB domain-containing protein 35 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 110.6 | 1.1e-34 | 6 | 104 | 2 | 100 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99
C+aCkv++ +Ca++C++ap+fp ++ ++f+ +h++FGa nv k+l++l++ +re+a+++l+yeAea rdP+ G+vg+++++++ql++l+++++++k+
AT5G35900.1 6 CSACKVMKCDCAPNCIFAPHFPLTNLETFERLHRIFGAGNVFKILANLDPIQRETAVNALCYEAEALERDPIFGCVGIFNHYKNQLQNLDEQINSAKN 103
**********************************************************************************************9998 PP
DUF260 100 e 100
e
AT5G35900.1 104 E 104
7 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 206 aa
Download sequence Send
to blast |
MNSTCCSACK VMKCDCAPNC IFAPHFPLTN LETFERLHRI FGAGNVFKIL ANLDPIQRET 60
AVNALCYEAE ALERDPIFGC VGIFNHYKNQ LQNLDEQINS AKNELAAIIG LDNVPQYSSI 120
PMPADFLTNK FSLHPYIEKM EGLDEVQKKE LMQLPPVDAQ VIVNEMFRKR GNIKICGGHG 180
DACASTSGGT SATQKTLPFP QNHNQP
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB005236 | 0.0 | AB005236.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK22. |
| GenBank | AB473860 | 0.0 | AB473860.1 Arabidopsis thaliana ASL27 mRNA for ASYMMETRIC LEAVES2-like 27 protein, complete cds. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
| GenBank | DQ056696 | 0.0 | DQ056696.1 Arabidopsis thaliana LOB domain family protein (At5g35900) mRNA, complete cds. |
| Publications
? help Back to Top |
- Iwakawa H, et al.
The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper.
Plant Cell Physiol., 2002. 43(5): p. 467-78
[PMID:12040093] - Shuai B,Reynaga-Peña CG,Springer PS
The lateral organ boundaries gene defines a novel, plant-specific gene family.
Plant Physiol., 2002. 129(2): p. 747-61
[PMID:12068116] - Ma S,Gong Q,Bohnert HJ
Dissecting salt stress pathways.
J. Exp. Bot., 2006. 57(5): p. 1097-107
[PMID:16510518] - Matsumura Y,Iwakawa H,Machida Y,Machida C
Characterization of genes in the ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES (AS2/LOB) family in Arabidopsis thaliana, and functional and molecular comparisons between AS2 and other family members.
Plant J., 2009. 58(3): p. 525-37
[PMID:19154202] - Efroni I, et al.
Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
Dev. Cell, 2013. 24(4): p. 438-45
[PMID:23449474]
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