 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
AT5G29000.2 |
| Common Name | F3F24.100, PHL1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
G2-like |
| Protein Properties |
Length: 413aa MW: 46221.3 Da PI: 5.4333 |
| Description |
G2-like family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 104.5 | 6.3e-33 | 231 | 285 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l++ +gLt++hvkSHLQkYR+
AT5G29000.2 231 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRT 285
79****************************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 413 aa
Download sequence Send
to blast |
MTLANDFGYS TAMSSSYSAL HTSVEDRYHK LPNSFWVSSG QELMNNPVPC QSVSGGNSGG 60
YLFPSSSGYC NVSAVLPHGR NLQNQPPVST VPRDRLAMQD CPLIAQSSLI NHHPQEFIDP 120
LHEFFDFSDH VPVQNLQAES SGVRVDSSVE LHKKSEWQDW ADQLISVDDG SEPNWSELLG 180
DSSSHNPNSE IPTPFLDVPR LDITANQQQQ MVSSEDQLSG RNSSSSVATS KQRMRWTPEL 240
HEAFVEAVNQ LGGSERATPK AVLKLLNNPG LTIYHVKSHL QKYRTARYKP ETSEVTGEPQ 300
EKKMTSIEDI KSLDMKTSVE ITQALRLQME VQKRLHEQLE IQRSLQLQIE KQGRYLQMMF 360
EKQQKIQDNK SSSSEASPKQ CNGSFAEVEV GLETLTGDQN ESASASRKRV RED
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4k_A | 1e-28 | 231 | 289 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 1e-28 | 231 | 289 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 1e-28 | 231 | 289 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 1e-28 | 231 | 289 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 1e-28 | 231 | 289 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 1e-28 | 231 | 289 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 1e-28 | 231 | 289 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 1e-28 | 231 | 289 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
| Function -- GeneRIF ? help
Back to Top |
- PHR1 and PHL1 are partially redundant transcription factors acting as central integrators of phosphate starvation responses.[PHL1]
[PMID: 20838596] - The results reveal a previously unknown link between Pro metabolism and phosphate nutrition and show that Pro biosynthesis is target of cross talk between Abscisic Acid (ABA) signaling and regulation of phosphate homeostasis through PHR1- and PHL1-mediated transcriptional activation of the P5CS1 gene.
[PMID: 28765275]
|
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
| Phenotype -- Disruption Phenotype ? help
Back to Top |
| Source |
Description |
| UniProt | DISRUPTION PHENOTYPE: No effect on phosphate starvation responsiveness, due to the redundancy with PHR1. {ECO:0000269|PubMed:20838596}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT002344 | 0.0 | BT002344.1 Arabidopsis thaliana clone C104936 unknown protein (At5g29000) mRNA, complete cds. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Rubio V, et al.
A conserved MYB transcription factor involved in phosphate starvation signaling both in vascular plants and in unicellular algae.
Genes Dev., 2001. 15(16): p. 2122-33
[PMID:11511543] - Rizhsky L, et al.
When defense pathways collide. The response of Arabidopsis to a combination of drought and heat stress.
Plant Physiol., 2004. 134(4): p. 1683-96
[PMID:15047901] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Truman W,de Zabala MT,Grant M
Type III effectors orchestrate a complex interplay between transcriptional networks to modify basal defence responses during pathogenesis and resistance.
Plant J., 2006. 46(1): p. 14-33
[PMID:16553893] - Ascencio-Ib
Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
Plant Physiol., 2008. 148(1): p. 436-54
[PMID:18650403] - Bustos R, et al.
A central regulatory system largely controls transcriptional activation and repression responses to phosphate starvation in Arabidopsis.
PLoS Genet., 2010. 6(9): p. e1001102
[PMID:20838596] - Ou B, et al.
A high-throughput screening system for Arabidopsis transcription factors and its application to Med25-dependent transcriptional regulation.
Mol Plant, 2011. 4(3): p. 546-55
[PMID:21343311] - Elfving N, et al.
The Arabidopsis thaliana Med25 mediator subunit integrates environmental cues to control plant development.
Proc. Natl. Acad. Sci. U.S.A., 2011. 108(20): p. 8245-50
[PMID:21536906] - Klopffleisch K, et al.
Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis.
Mol. Syst. Biol., 2011. 7: p. 532
[PMID:21952135] - Efroni I, et al.
Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
Dev. Cell, 2013. 24(4): p. 438-45
[PMID:23449474] - Kim DY,Scalf M,Smith LM,Vierstra RD
Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis.
Plant Cell, 2013. 25(5): p. 1523-40
[PMID:23667124] - Bournier M, et al.
Arabidopsis ferritin 1 (AtFer1) gene regulation by the phosphate starvation response 1 (AtPHR1) transcription factor reveals a direct molecular link between iron and phosphate homeostasis.
J. Biol. Chem., 2013. 288(31): p. 22670-80
[PMID:23788639] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Mar
Large-scale identification of gibberellin-related transcription factors defines group VII ETHYLENE RESPONSE FACTORS as functional DELLA partners.
Plant Physiol., 2014. 166(2): p. 1022-32
[PMID:25118255] - Bonnot C, et al.
A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
New Phytol., 2016. 209(1): p. 161-76
[PMID:26243630] - Sun L,Song L,Zhang Y,Zheng Z,Liu D
Arabidopsis PHL2 and PHR1 Act Redundantly as the Key Components of the Central Regulatory System Controlling Transcriptional Responses to Phosphate Starvation.
Plant Physiol., 2016. 170(1): p. 499-514
[PMID:26586833] - Aleksza D,Horváth GV,Sándor G,Szabados L
Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
Plant Physiol., 2017. 175(1): p. 555-567
[PMID:28765275]
|
