PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G28530.1 | ||||||||
Common Name | FRS10, T26D3.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | FAR1 | ||||||||
Protein Properties | Length: 685aa MW: 78525.4 Da PI: 6.0527 | ||||||||
Description | FAR1-related sequence 10 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 76.6 | 5e-24 | 69 | 160 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r+r++ r+gC+ kl ++ke ++w+v+++++ HnHel AT5G28530.1 69 EYYSTFARKSGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDGKLYLTKEVvdgVSHWYVSQFSNVHNHELL 160 69********************8888.*******************************************99867789*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.9E-22 | 69 | 160 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.5E-19 | 292 | 385 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.458 | 565 | 603 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.8E-7 | 575 | 602 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.1E-6 | 578 | 605 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 685 aa Download sequence Send to blast |
MALKPLNNIW IRRQQCPCGD WKCYIRLEED ESTITKSEIE STPTPTSQYD TVFTPYVGQI 60 FTTDDEAFEY YSTFARKSGF SIRKARSTES QNLGVYRRDF VCYRSGFNQP RKKANVEHPR 120 ERKSVRCGCD GKLYLTKEVV DGVSHWYVSQ FSNVHNHELL EDDQVRLLPA YRKIQQSDQE 180 RILLLSKAGF PVNRIVKLLE LEKGVVSGQL PFIEKDVRNF VRACKKSVQE NDAFMTEKRE 240 SDTLELLECC KGLAERDMDF VYDCTSDENQ KVENIAWAYG DSVRGYSLFG DVVVFDTSYR 300 SVPYGLLLGV FFGIDNNGKA MLLGCVLLQD ESCRSFTWAL QTFVRFMRGR HPQTILTDID 360 TGLKDAIGRE MPNTNHVVFM SHIVSKLASW FSQTLGSHYE EFRAGFDMLC RAGNVDEFEQ 420 QWDLLVTRFG LVPDRHAALL YSCRASWLPC CIREHFVAQT MTSEFNLSID SFLKRVVDGA 480 TCMQLLLEES ALQVSAAASL AKQILPRFTY PSLKTCMPME DHARGILTPY AFSVLQNEMV 540 LSVQYAVAEM ANGPFIVHHY KKMEGECCVI WNPENEEIQC SCKEFEHSGI LCRHTLRVLT 600 VKNCFHIPEQ YFLLRWRQES PHVATENQNG QGIGDDSAQT FHSLTETLLT ESMISKDRLD 660 YANQELSLLI DRVRNTAPAN CLYQP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.55070 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 22327145 | 0.0 | ||||
Genevisible | 245954_at | 0.0 | ||||
Expression Atlas | AT5G28530 | - | ||||
AtGenExpress | AT5G28530 | - | ||||
ATTED-II | AT5G28530 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G28530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G28530 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | T26D3 | 0.0 | AF262043.1 Arabidopsis thaliana BAC T26D3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_198205.2 | 0.0 | FAR1-related sequence 10 | ||||
Swissprot | Q9LKR4 | 0.0 | FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10 | ||||
TrEMBL | A0A1P8BEG3 | 0.0 | A0A1P8BEG3_ARATH; FAR1-related sequence 10 | ||||
STRING | AT5G28530.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1765 | 26 | 74 |
Representative plant | OGRP30 | 12 | 351 |
Link Out ? help Back to Top | |
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Phytozome | AT5G28530.1 |
Entrez Gene | 832948 |
iHOP | AT5G28530 |
wikigenes | AT5G28530 |
Publications ? help Back to Top | |||
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