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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT5G28300.1 |
Common Name | AtGT2L, GT2L, T8M17.70 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
Trihelix |
Protein Properties |
Length: 619aa MW: 71280.1 Da PI: 7.2368 |
Description |
Trihelix family protein |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 53.7 | 5.6e-17 | 103 | 172 | 2 | 76 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76
W+ +evlaL+++r+ +e+++ + We+ s+k++e gf+rsp++Ckek+e+ ++ry + +++++++t++++
AT5G28300.1 103 WCSDEVLALLRFRSTVENWFPEF-----TWEHTSRKLAEVGFKRSPQECKEKFEEEERRYFNSNNNNNNNTNDHQ 172
********************998.....9****************************************987776 PP
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2 | trihelix | 105.3 | 4.4e-33 | 459 | 553 | 1 | 86 |
trihelix 1 rWtkqevlaLiearr..........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
rW+k+evlaLi++rr ++e++l++++++ plWe++skkm e g++rs+k+Ckekwen+nk+++k+k+ +kkr + +s+tcpyf+ql+
AT5G28300.1 459 RWPKDEVLALINIRRsisnmndddhKDENSLSTSSKAVPLWERISKKMLEIGYKRSAKRCKEKWENINKYFRKTKDVNKKR-PLDSRTCPYFHQLT 553
8**********************99999****************************************************8.9***********98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0001158 | Molecular Function | enhancer sequence-specific DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
Protein Sequence Length: 619 aa
Download sequence Send
to blast |
MFDGGVPEQI HRFIASPPPP PPLPPHQPAA ERSLPFPVSF SSFNTNHQPQ HMLSLDSRKI 60 IHHHHHHHHH DIKDGGATTG EWIGQTDHDD SDNHHQHHHH HPWCSDEVLA LLRFRSTVEN 120 WFPEFTWEHT SRKLAEVGFK RSPQECKEKF EEEERRYFNS NNNNNNNTND HQHIGNYNNK 180 GNNYRIFSEV EEFYHHGHDN EHVSSEVGDN QNKRTNLVEG KGNVGETVQD LMAEDKLRDQ 240 DQGQVEEASM ENQRNSIEVG KVGNVEDDAK SSSSSSLMMI MKEKKRKKRK KEKERFGVLK 300 GFCEGLVRNM IAQQEEMHKK LLEDMVKKEE EKIAREEAWK KQEIERVNKE VEIRAQEQAM 360 ASDRNTNIIK FISKFTDHDL DVVQNPTSPS QDSSSLALRK TQGRRKFQTS SSLLPQTLTP 420 HNLLTIDKSL EPFSTKTLKP KNQNPKPPKS DDKSDLGKRW PKDEVLALIN IRRSISNMND 480 DDHKDENSLS TSSKAVPLWE RISKKMLEIG YKRSAKRCKE KWENINKYFR KTKDVNKKRP 540 LDSRTCPYFH QLTALYSQPP TGTTATTATT ATSARDLDTR PEENRVGSQD PDISVPMHVD 600 GDGAGDKSNV QFSGFDLEF
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 284 | 290 | KRKKRKK |
2 | 285 | 291 | RKKRKKE |
3 | 285 | 292 | RKKRKKEK |
4 | 286 | 290 | KKRKK |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Function -- GeneRIF ? help
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- AtGT2L is a Ca(2+)/CaM-binding nuclear transcription factor involved in plant responses to cold and salt stresses.
[PMID: 22325890]
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT000461 | 0.0 | BT000461.1 Arabidopsis thaliana Unknown protein mRNA, complete cds. |
GenBank | BT008389 | 0.0 | BT008389.1 Arabidopsis thaliana At5g28300 gene, complete cds. |
Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Yamada K, et al.
Empirical analysis of transcriptional activity in the Arabidopsis genome. Science, 2003. 302(5646): p. 842-6 [PMID:14593172] - Xi J,Qiu Y,Du L,Poovaiah BW
Plant-specific trihelix transcription factor AtGT2L interacts with calcium/calmodulin and responds to cold and salt stresses. Plant Sci., 2012. 185-186: p. 274-80 [PMID:22325890] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]
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