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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT5G28040.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
GeBP |
Protein Properties |
Length: 427aa MW: 46906.2 Da PI: 4.6417 |
Description |
DNA-binding storekeeper protein-related transcriptional regulator |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF573 | 117.7 | 6.3e-37 | 124 | 222 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97
lfqrlw++eDei lL+G++d+ ++++g s++ d+ fye++k++++++++k+qlveK+rrLKkK+++ ++k +sgke+ f+++hdq +f++s+kiW+
AT5G28040.1 124 LFQRLWTDEDEIELLRGFLDYiTNHRGNSSHPpDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKFSSGKEVFFKSPHDQATFDISRKIWN 221
79*******************9999**999999****************************************************************8 PP
DUF573 98 s 98
+
AT5G28040.1 222 Q 222
5 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 427 aa
Download sequence Send
to blast |
MASDQRDTDF SAESPDLEED GGGGGGGRGG GETESDEDVV IPEPNEAEDD DHDPDPDPEY 60 EDLNSPSMIS RAPATKSSSG TVTVALPAGS AVPVASIPSD SDQKWHRMTE IVHQRPPIDD 120 SRRLFQRLWT DEDEIELLRG FLDYITNHRG NSSHPPDTAP FYEQIKSKLQ LEFNKNQLVE 180 KLRRLKKKYR NVMSKFSSGK EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDLEET 240 NHVNNANGSS GFNVSVIGNA NVDVDSENGL EKKVTISRKR SRSRIGKIDE DKPVLAPCDG 300 VIPNAVNLNE NVAVGCDFGD GRNLGVLIEE TVKNCVSPMI KEMMNSTTGM MMAATGGFPG 360 GGAHALGVLS PMLMPSMNLG FGGKGVGDER WRRQQILELE VYSRRLELVQ EQIRATVNEL 420 KTMPNGG
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Function -- GeneRIF ? help
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- Gain-of-function lines of VFP4 and ATL31 exhibited recalcitrance to Agrobacterium tumorigenicity, suggesting that A. tumefaciens may utilize the host ubiquitin/proteasome system to destabilize transcriptional regulators of the host disease response machinery.
[PMID: 29264953]
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC007627 | 0.0 | AC007627.3 Genomic Sequence For Arabidopsis thaliana Clone F15F15, Chromosome V, complete sequence. |
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Publications
? help Back to Top |
- Curaba J,Herzog M,Vachon G
GeBP, the first member of a new gene family in Arabidopsis, encodes a nuclear protein with DNA-binding activity and is regulated by KNAT1. Plant J., 2003. 33(2): p. 305-17 [PMID:12535344] - Wang Y, et al.
Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. Plant Physiol., 2008. 148(3): p. 1201-11 [PMID:18775970] - Jones AM, et al.
Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana. J Proteomics, 2009. 72(3): p. 439-51 [PMID:19245862] - Reiland S, et al.
Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks. Plant Physiol., 2009. 150(2): p. 889-903 [PMID:19376835] - García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]
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