PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT5G27960.1

Common Name

AGL90, F15F15.30

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 320aa MW: 36729.7 Da PI: 7.5359

Description

AGAMOUS-like 90

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT5G27960.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	55.5	7.2e-18	9	48	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n++ r+++f kR+ngi+KK +ELS+LC+++++ +i+s+ AT5G27960.1 9 IANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSP 48 89************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00404	2.2E-7	1	21	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.713	1	47	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.3E-21	1	58	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.15E-21	2	93	IPR002100	Transcription factor, MADS-box
CDD	cd00266	4.05E-30	2	83	No hit	No description
Pfam	PF00319	1.1E-16	9	48	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-7	21	36	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009001	anatomy	fruit

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MKKVKLSLIA NERSRKTSFM KRKNGIFKKL HELSTLCGVQ ACALIYSPFI PVPESWPSRE 60 GAKKVASKFL EMPRTARTRK MMDQETHLME RITKAKEQLK NLAAENRELQ VRRFMFDCVE 120 GKMSQYRYDA KDLQDLLSCM NLYLDQLNGR IESIKENGES LLSSVSPFPT RIGVDEIGDE 180 SFSDSPIHST TRVVDTPNAT NPHVLAGDMT PFLDADANAN MNQVQYQAPN NLFNQIQREF 240 YNINLNLNLN LNSNQYLNQQ QSFMNPMVEQ HMNHVGGRES IPFVDRNYYN YNQLPAVDLA 300 STSYMPSTTD VYDPYINNNL

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	42568106	0.0
Genevisible	246836_s_at	1e-176
Expression Atlas	AT5G27960	-
AtGenExpress	AT5G27960	-

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT5G27960.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Interaction ? help Back to Top
Source	Intact With
BioGRID	AT5G60440, AT1G31630, AT1G31640, AT1G46408, AT1G48150, AT1G77980
IntAct	Search Q7XJK5

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT5G27960

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY141249	0.0	AY141249.1 Arabidopsis thaliana MADS-box protein AGL90 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_198148.2	0.0	AGAMOUS-like 90
Swissprot	Q7XJK5	0.0	AGL90_ARATH; Agamous-like MADS-box protein AGL90
TrEMBL	C0SVR4	0.0	C0SVR4_ARATH; Uncharacterized protein At5g27960 (Fragment)
STRING	AT5G27960.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415
Representative plant	OGRP114	13	173

Link Out ? help Back to Top
Phytozome	AT5G27960.1
Entrez Gene	832865
iHOP	AT5G27960
wikigenes	AT5G27960

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] De Bodt S, et al. Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants. J. Mol. Evol., 2003. 56(5): p. 573-86 [PMID:12698294] Hudson ME,Lisch DR,Quail PH The FHY3 and FAR1 genes encode transposase-related proteins involved in regulation of gene expression by the phytochrome A-signaling pathway. Plant J., 2003. 34(4): p. 453-71 [PMID:12753585] Parenicová L, et al. Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Plant Cell, 2003. 15(7): p. 1538-51 [PMID:12837945] Boisson B,Giglione C,Meinnel T Unexpected protein families including cell defense components feature in the N-myristoylome of a higher eukaryote. J. Biol. Chem., 2003. 278(44): p. 43418-29 [PMID:12912986] Kofuji R, et al. Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses. Mol. Biol. Evol., 2003. 20(12): p. 1963-77 [PMID:12949148] de Folter S, et al. Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. Plant Cell, 2005. 17(5): p. 1424-33 [PMID:15805477] Lehti-Shiu MD,Adamczyk BJ,Fernandez DE Expression of MADS-box genes during the embryonic phase in Arabidopsis. Plant Mol. Biol., 2005. 58(1): p. 89-107 [PMID:16028119] Kang IH,Steffen JG,Portereiko MF,Lloyd A,Drews GN The AGL62 MADS domain protein regulates cellularization during endosperm development in Arabidopsis. Plant Cell, 2008. 20(3): p. 635-47 [PMID:18334668] Walia H, et al. Dosage-dependent deregulation of an AGAMOUS-LIKE gene cluster contributes to interspecific incompatibility. Curr. Biol., 2009. 19(13): p. 1128-32 [PMID:19559614] Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis. Plant Physiol., 2010. 154(1): p. 287-300 [PMID:20631316] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]