PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G27944.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 224aa    MW: 25783.3 Da    PI: 9.4038
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G27944.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.93e-192776250
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                 +++++ ++++ +s R ++++KKA ELS+LCd+ev+vi+++ +g+l ++++
  AT5G27944.1 27 SSSSTAKKTTNLSMREQTMFKKALELSTLCDIEVCVILYGRDGELiKTWP 76
                 57888899999********************************9856886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.7E-14677IPR002100Transcription factor, MADS-box
PfamPF003191.7E-123071IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.8343078IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-1532112IPR002100Transcription factor, MADS-box
CDDcd002665.63E-2135103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MYSSMSTKKK TKLSVRNQTC FKKSSLSSSS TAKKTTNLSM REQTMFKKAL ELSTLCDIEV  60
CVILYGRDGE LIKTWPEDQS KVRDMAERFS RLHERERCKK RTNLSLFLRK KILDDNKLSE  120
KVLEMEDSLE SGLRVLQNKL LLLQPEKNQT KLGQSRAVSS TTNLLSSPEN HHNQQWTEPL  180
ENGVSNTEQE LSTSSLSQHQ SKYSVFLYNH DNGSFYQVPD SICF
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible246788_at1e-77
Expression AtlasAT5G27944-
AtGenExpressAT5G27944-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G27944.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G27944
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0076270.0AC007627.3 Genomic Sequence For Arabidopsis thaliana Clone F15F15, Chromosome V, complete sequence.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001119289.11e-164MADS-box transcription factor family protein
SwissprotQ7X9N21e-131AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLB3H5S01e-163B3H5S0_ARATH; MADS-box transcription factor family protein
STRINGAT5G27944.11e-163(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Representative plantOGRP6766218
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]