PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G27880.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 278aa    MW: 30934.8 Da    PI: 9.627
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G27880.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-0580102123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+k Fs++  L  H++ H
  AT5G27880.1  80 YTCHFCKKGFSTSQALGGHQNAH 102
                  9*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.94E-777107No hitNo description
Gene3DG3DSA:3.30.160.603.3E-578106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.82280107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MSSSMSSAGS STPKSKKLKG IVVDMEKSKE KATRNTILKL GSPQEVTSER RIENSSFGSS  60
AVRRGREIMK FYPSKSNKIY TCHFCKKGFS TSQALGGHQN AHKQEREWDK KRKEMEAEYP  120
GLSFLNPFLD KPHILLGGYS QDALSNENHL GITLDPFKRL IYPSFNAGMN MAVVPRVTPT  180
RFFTGNTSTN GSTSRVPDPL PSYNNLYPSN SRNVLPFPPP QTTKLSSNFV SQGNVLSEEN  240
FISKIGTNNI VEIDDDDDDI QPEEEKTKSG RIDLSLSL
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184211670.0
Expression AtlasAT5G27880-
AtGenExpressAT5G27880-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G27880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G27880
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0073990.0AC007399.1 Arabidopsis thaliana BAC F14I23 from chromosome V near 69 cM, complete sequence.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198140.10.0C2H2 and C2HC zinc fingers superfamily protein
TrEMBLA0A178UA230.0A0A178UA23_ARATH; Uncharacterized protein
TrEMBLF4K5Q70.0F4K5Q7_ARATH; C2H2 and C2HC zinc fingers superfamily protein
STRINGAT5G27880.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  3. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]