PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT5G27090.2 | ||||||||
Common Name | AGL54 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 157aa MW: 17951.4 Da PI: 7.3841 | ||||||||
Description | AGAMOUS-like 54 | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.5 | 4.8e-20 | 27 | 75 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50 ++++ ++++ +s R ++++KKA ELS+LCd+ev+vi+++ +gkl ++++ AT5G27090.2 27 SSSNAKKTTNLSMREQTMFKKALELSTLCDIEVCVIYYGRDGKLiKTWP 75 6788899999*********************************856887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-12 | 6 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 4.52E-21 | 20 | 97 | No hit | No description |
Pfam | PF00319 | 3.2E-13 | 29 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-13 | 29 | 83 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.905 | 29 | 77 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0020093 | anatomy | antipodal cell |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 157 aa Download sequence Send to blast |
MDSSTSTKKN TKLFVRNQTC FKKSSLSSSN AKKTTNLSMR EQTMFKKALE LSTLCDIEVC 60 VIYYGRDGKL IKTWPEDQSK ILHDKKLSEK VLEMEDSLES GLRVLQDKLL LLQPEKNQTE 120 LGQSCAVYST TYPLSSPSLI EDHQHQQQWT EPLSNTE |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | AT5G27090 | |||||
AtGenExpress | AT5G27090 |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT5G27090.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Intact With | |||||
BioGRID | AT5G49490 |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT5G27090 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF029264 | 1e-131 | AF029264.1 Arabidopsis thaliana putative cdc20 protein (CDC20.3) gene, complete cds. | |||
GenBank | AY141218 | 1e-131 | AY141218.1 Arabidopsis thaliana MADS-box protein AGL54 mRNA, complete cds. | |||
GenBank | CP002688 | 1e-131 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | F15P11 | 1e-131 | AF160760.1 Arabidopsis thaliana BAC F15P11. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001119283.1 | 1e-112 | AGAMOUS-like 54 | ||||
Swissprot | Q7X9N2 | 6e-74 | AGL53_ARATH; Agamous-like MADS-box protein AGL53 | ||||
TrEMBL | B3H507 | 1e-110 | B3H507_ARATH; AGAMOUS-like 54 | ||||
STRING | AT5G27090.1 | 1e-105 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT5G27090.2 |
Entrez Gene | 832767 |
iHOP | AT5G27090 |
wikigenes | AT5G27090 |