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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
AT5G27090.1 |
| Common Name | AGL54, F15P11.1 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
M-type_MADS |
| Protein Properties |
Length: 187aa MW: 21737.8 Da PI: 9.2242 |
| Description |
AGAMOUS-like 54 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 62 | 6.7e-20 | 27 | 75 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
++++ ++++ +s R ++++KKA ELS+LCd+ev+vi+++ +gkl ++++
AT5G27090.1 27 SSSNAKKTTNLSMREQTMFKKALELSTLCDIEVCVIYYGRDGKLiKTWP 75
6788899999*********************************856886 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 187 aa
Download sequence Send
to blast |
MDSSTSTKKN TKLFVRNQTC FKKSSLSSSN AKKTTNLSMR EQTMFKKALE LSTLCDIEVC 60
VIYYGRDGKL IKTWPEDQSK VRDMAERFSR LHERERCKKR TNLSLFLRKQ ILHDKKLSEK 120
VLEMEDSLES GLRVLQDKLL LLQPEKNQTE LGQSCAVYST TYPLSSPSLI EDHQHQQQWT 180
EPLSNTE
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY141218 | 0.0 | AY141218.1 Arabidopsis thaliana MADS-box protein AGL54 mRNA, complete cds. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
| GenBank | F15P11 | 0.0 | AF160760.1 Arabidopsis thaliana BAC F15P11. |
| Publications
? help Back to Top |
- Sessions A, et al.
A high-throughput Arabidopsis reverse genetics system.
Plant Cell, 2002. 14(12): p. 2985-94
[PMID:12468722] - De Bodt S, et al.
Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.
J. Mol. Evol., 2003. 56(5): p. 573-86
[PMID:12698294] - Parenicová L, et al.
Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
Plant Cell, 2003. 15(7): p. 1538-51
[PMID:12837945] - Kofuji R, et al.
Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses.
Mol. Biol. Evol., 2003. 20(12): p. 1963-77
[PMID:12949148] - Dal Bosco C, et al.
Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
J. Biol. Chem., 2004. 279(2): p. 1060-9
[PMID:14576160] - de Folter S, et al.
Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
Plant Cell, 2005. 17(5): p. 1424-33
[PMID:15805477] - Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC
An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis.
Plant Physiol., 2010. 154(1): p. 287-300
[PMID:20631316] - Zhang S, et al.
FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
Plant Physiol., 2018. 177(1): p. 285-299
[PMID:29523711]
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