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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
AT5G27070.1 |
| Common Name | AGL53, F15P11.2 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
M-type_MADS |
| Protein Properties |
Length: 287aa MW: 32684.1 Da PI: 8.6045 |
| Description |
AGAMOUS-like 53 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 58.3 | 9.5e-19 | 27 | 76 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
+++++ ++++ +s R ++++KKA ELS+LC+++v+vi+++ +gkl ++++
AT5G27070.1 27 SSSSTAKKTTNLSMREQTMFKKALELSTLCNIDVCVIYYGRDGKLiKTWP 76
57888899999*********************************856786 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005886 | Cellular Component | plasma membrane |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 287 aa
Download sequence Send
to blast |
MDSSMSTKKK TKLSVRNQTC FKKSSLSSSS TAKKTTNLSM REQTMFKKAL ELSTLCNIDV 60
CVIYYGRDGK LIKTWPEDQS KVRDMAERFS RLHERERCKK RTNLSLFLRK KILDDTKLSE 120
KVLEMEDSLE SGLRVLQDKL LLLQPEKNQT EFGQTRAVSS TTNPLSPPPS LIEDHRHQQW 180
TEPLMSGVSN TEQDLSTSSL SQNQSRISVF LYNHDNRSFY QVPDSVSSFD QSALLGEQGS 240
GLGSNFDLPP MVFPPQMQTQ TPLVPFDQFA AWNQAPSFAD PMMFPYN
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY141217 | 0.0 | AY141217.1 Arabidopsis thaliana MADS-box protein AGL53 mRNA, complete cds. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
| GenBank | F15P11 | 0.0 | AF160760.1 Arabidopsis thaliana BAC F15P11. |
| Publications
? help Back to Top |
- Sessions A, et al.
A high-throughput Arabidopsis reverse genetics system.
Plant Cell, 2002. 14(12): p. 2985-94
[PMID:12468722] - De Bodt S, et al.
Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.
J. Mol. Evol., 2003. 56(5): p. 573-86
[PMID:12698294] - Parenicová L, et al.
Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
Plant Cell, 2003. 15(7): p. 1538-51
[PMID:12837945] - N
Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry.
Mol. Cell Proteomics, 2003. 2(11): p. 1234-43
[PMID:14506206] - Dal Bosco C, et al.
Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
J. Biol. Chem., 2004. 279(2): p. 1060-9
[PMID:14576160] - de Folter S, et al.
Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
Plant Cell, 2005. 17(5): p. 1424-33
[PMID:15805477] - Popescu SC, et al.
Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays.
Proc. Natl. Acad. Sci. U.S.A., 2007. 104(11): p. 4730-5
[PMID:17360592] - Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC
An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis.
Plant Physiol., 2010. 154(1): p. 287-300
[PMID:20631316] - Li HJ, et al.
Arabidopsis CBP1 Is a Novel Regulator of Transcription Initiation in Central Cell-Mediated Pollen Tube Guidance.
Plant Cell, 2015. 27(10): p. 2880-93
[PMID:26462908] - Zhang S, et al.
FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
Plant Physiol., 2018. 177(1): p. 285-299
[PMID:29523711]
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