 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
AT5G27050.1 |
| Common Name | AGL101 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
M-type_MADS |
| Protein Properties |
Length: 120aa MW: 14188.5 Da PI: 9.9687 |
| Description |
AGAMOUS-like 101 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 46.6 | 4.4e-15 | 1 | 32 | 20 | 50 |
HHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
SRF-TF 20 ilKKAeELSvLCdaevaviifsstgkl.yeys 50
++KKA ELS+LC++ev+vi+++ +g+l ++++
AT5G27050.1 1 MFKKALELSTLCNIEVCVIYYGRDGELfKTWP 32
69***********************9835776 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
| GenBank | DQ056693 | 0.0 | DQ056693.1 Arabidopsis thaliana MADS-box family protein (At5g27050) mRNA, complete cds. |
| GenBank | F15P11 | 0.0 | AF160760.1 Arabidopsis thaliana BAC F15P11. |
| Publications
? help Back to Top |
- Sessions A, et al.
A high-throughput Arabidopsis reverse genetics system.
Plant Cell, 2002. 14(12): p. 2985-94
[PMID:12468722] - De Bodt S, et al.
Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.
J. Mol. Evol., 2003. 56(5): p. 573-86
[PMID:12698294] - Parenicová L, et al.
Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
Plant Cell, 2003. 15(7): p. 1538-51
[PMID:12837945] - Kofuji R, et al.
Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses.
Mol. Biol. Evol., 2003. 20(12): p. 1963-77
[PMID:12949148] - de Folter S, et al.
Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
Plant Cell, 2005. 17(5): p. 1424-33
[PMID:15805477] - Tamura K,Fukao Y,Iwamoto M,Haraguchi T,Hara-Nishimura I
Identification and characterization of nuclear pore complex components in Arabidopsis thaliana.
Plant Cell, 2010. 22(12): p. 4084-97
[PMID:21189294] - Zhang S, et al.
FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
Plant Physiol., 2018. 177(1): p. 285-299
[PMID:29523711]
|
