PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT5G27050.1 | ||||||||
Common Name | AGL101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 120aa MW: 14188.5 Da PI: 9.9687 | ||||||||
Description | AGAMOUS-like 101 | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.6 | 4.4e-15 | 1 | 32 | 20 | 50 |
HHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS SRF-TF 20 ilKKAeELSvLCdaevaviifsstgkl.yeys 50 ++KKA ELS+LC++ev+vi+++ +g+l ++++ AT5G27050.1 1 MFKKALELSTLCNIEVCVIYYGRDGELfKTWP 32 69***********************9835776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00319 | 1.6E-9 | 1 | 28 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 9.657 | 1 | 34 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-12 | 1 | 68 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.07E-16 | 1 | 59 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 120 aa Download sequence Send to blast |
MFKKALELST LCNIEVCVIY YGRDGELFKT WPEDESKVRD MAERFTKLNE RERRKKRTNL 60 SLFLRKKILD DNKLSGKVLE MKDSLERGLR VLQDKLLLLQ PENQTKSLTR SVSSLDYVFV |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 18421074 | 0.0 | ||||
Genevisible | 246805_at | 1e-135 | ||||
Expression Atlas | AT5G27050 | - | ||||
AtGenExpress | AT5G27050 | - | ||||
ATTED-II | AT5G27050 | - |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT5G27050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Intact With | |||||
BioGRID | AT5G38620, AT5G49420, AT1G46408, AT1G48150 |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT5G27050 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | DQ056693 | 0.0 | DQ056693.1 Arabidopsis thaliana MADS-box family protein (At5g27050) mRNA, complete cds. | |||
GenBank | F15P11 | 0.0 | AF160760.1 Arabidopsis thaliana BAC F15P11. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_198057.1 | 3e-81 | AGAMOUS-like 101 | ||||
Swissprot | Q7X9N2 | 8e-61 | AGL53_ARATH; Agamous-like MADS-box protein AGL53 | ||||
TrEMBL | Q4PSE3 | 7e-80 | Q4PSE3_ARATH; AGAMOUS-like 101 | ||||
STRING | AT5G27050.1 | 1e-80 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5753 | 9 | 44 | Representative plant | OGRP6766 | 2 | 18 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT5G27050.1 |
Entrez Gene | 832763 |
iHOP | AT5G27050 |
wikigenes | AT5G27050 |