 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
AT5G26950.1 |
| Common Name | AGL93, F2P16.17 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
M-type_MADS |
| Protein Properties |
Length: 289aa MW: 32755.1 Da PI: 8.4664 |
| Description |
AGAMOUS-like 93 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 58.2 | 1e-18 | 27 | 76 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
+++++ ++++ +s R ++++KKA ELS+LC+++v+vi+++ +gkl ++++
AT5G26950.1 27 SSSSTAKKTTNLSMREQTMFKKALELSTLCNIDVCVIYYGRDGKLiKTWP 76
57888899999*********************************856776 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 289 aa
Download sequence Send
to blast |
MDSSMSTKKK TKLSVRNQTC FKKSSLSSSS TAKKTTNLSM REQTMFKKAL ELSTLCNIDV 60
CVIYYGRDGK LIKTWPDDQS KVRDMAERFS RLHERERCKK RTNLSLFLRK KILDDTKLSE 120
KVLEMEDSLE SGLRVLQDKL LLLQPEKNQT EFGQTRAVSS TTNPLSPPPS LIEDHRHQQR 180
TEPLMSGVSN TEQDLSTSSL SQNQSKFSVF LYNHDNCSFY QVPDSVSSFD SLTSTGLLGE 240
QGSGLGSSFD LPMVFPPQMQ TQTPLVPFDQ FAPWNQAPSF ADPMMFPYN
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AY141228 | 0.0 | AY141228.1 Arabidopsis thaliana MADS-box protein AGL93 mRNA, complete cds. |
| GenBank | BT028900 | 0.0 | BT028900.1 Arabidopsis thaliana unknown protein (At5g26950) mRNA, complete cds. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
| GenBank | F2P16 | 0.0 | AF007270.1 Arabidopsis thaliana BAC F2P16, complete sequence. |
| Publications
? help Back to Top |
- De Bodt S, et al.
Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.
J. Mol. Evol., 2003. 56(5): p. 573-86
[PMID:12698294] - Parenicová L, et al.
Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
Plant Cell, 2003. 15(7): p. 1538-51
[PMID:12837945] - Kofuji R, et al.
Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses.
Mol. Biol. Evol., 2003. 20(12): p. 1963-77
[PMID:12949148] - De Bodt S,Raes J,Van de Peer Y,Theissen G
And then there were many: MADS goes genomic.
Trends Plant Sci., 2003. 8(10): p. 475-83
[PMID:14557044] - de Folter S, et al.
Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
Plant Cell, 2005. 17(5): p. 1424-33
[PMID:15805477] - Popescu SC, et al.
Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays.
Proc. Natl. Acad. Sci. U.S.A., 2007. 104(11): p. 4730-5
[PMID:17360592] - Zhang S, et al.
FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
Plant Physiol., 2018. 177(1): p. 285-299
[PMID:29523711]
|
