PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G26880.1
Common NameAGL26
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 368aa    MW: 41564.8 Da    PI: 9.263
Description AGAMOUS-like 26
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G26880.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.71.1e-162412791350
                  HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
       SRF-TF  13 fskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50 
                  +s R  +++KKA ELS+LCd+ev+vi++s +g+l ++++
  AT5G26880.1 241 LSMREDTMFKKALELSTLCDIEVCVILYSRDGELiKTWP 279
                  789*****************************9856786 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.1280.101.4E-4975223IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminal
SuperFamilySSF752171.18E-2781223IPR029028Alpha/beta knot methyltransferases
HamapMF_0188526.90182240IPR016914tRNA (cytidine/uridine-2'-O-)-methyltransferase
PfamPF005884.2E-2682223IPR001537tRNA/rRNA methyltransferase, SpoU type
SMARTSM004322.2E-6224280IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.905236281IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-14238315IPR002100Transcription factor, MADS-box
CDDcd002661.78E-19240306No hitNo description
PfamPF003191.2E-11241274IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001510Biological ProcessRNA methylation
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006396Biological ProcessRNA processing
GO:0006995Biological Processcellular response to nitrogen starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MESCCRSVIA SRTFHLRSSG RLFPSLSLTH LKGKLSLSIN SFSSKIQSHA LRGVGIGESD  60
KKNPLPRGAG EGVKEDARSK LLHVVLVSPQ IPGNTGCIAR TCAASAVGLH LVGPLGFQVD  120
DARVKRAGLD YWPFVVVKAH SSWAEFQEYF RLQEGEKRMI AFTKRGTRIH SDFSYRSGDY  180
LLFGSETSGL PPEALSDCNH EPYGGGTLRI PMVETYVRCL NLSILRCQEE NQIFCEKKPN  240
LSMREDTMFK KALELSTLCD IEVCVILYSR DGELIKTWPE DQSKVRDMAE RFSKLHERER  300
RKKRTNLSLF LRKKILDNSK LSEKVLEMKD SLESGLRVLQ DKLLLLQPEK NQTELGQIPV  360
INNGQNHW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4pzk_A3e-31822233137tRNA (cytidine(34)-2'-O)-methyltransferase
4pzk_B3e-31822233137tRNA (cytidine(34)-2'-O)-methyltransferase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.193110.0bud| flower| leaf| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible246851_at1e-106
Expression AtlasAT5G26880-
AtGenExpressAT5G26880-
ATTED-IIAT5G26880-
Functional Description ? help Back to Top
Source Description
TAIRRoot Specific
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G26880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT5G38620, AT5G49420, AT1G46408, AT1G48150
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G26880
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2264380.0AK226438.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL06-11-M20.
GenBankAK2275200.0AK227520.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-13-I07.
GenBankBT0109060.0BT010906.1 Arabidopsis thaliana At5g26880 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001318659.11e-164tRNA (cytidine(34)-2'-O)-methyltransferase
TrEMBLA0A178UI041e-163A0A178UI04_ARATH; AGL26
TrEMBLQ6NPL41e-163Q6NPL4_ARATH; At5g26880
STRINGAT5G26880.10.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Parenicová L, et al.
    Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
    Plant Cell, 2003. 15(7): p. 1538-51
    [PMID:12837945]
  2. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  3. de Folter S, et al.
    Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
    Plant Cell, 2005. 17(5): p. 1424-33
    [PMID:15805477]
  4. Gan Y,Filleur S,Rahman A,Gotensparre S,Forde BG
    Nutritional regulation of ANR1 and other root-expressed MADS-box genes in Arabidopsis thaliana.
    Planta, 2005. 222(4): p. 730-42
    [PMID:16021502]
  5. Ciftci-Yilmaz S, et al.
    The EAR-motif of the Cys2/His2-type zinc finger protein Zat7 plays a key role in the defense response of Arabidopsis to salinity stress.
    J. Biol. Chem., 2007. 282(12): p. 9260-8
    [PMID:17259181]
  6. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]