PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NF-YB

Protein Properties

Length: 159aa MW: 17942.2 Da PI: 4.462

Description

nuclear factor Y, subunit B13

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT5G23090.2	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	77.7	1.7e-24	11	102	3	92
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv.y.lkkyre 92 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se++d c++e+++ti+++ +l al lGf +y+e++ + y +ky AT5G23090.2 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAaYeQHKYET 102 6899***************************************************************************9865141345544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-39	8	139	IPR009072	Histone-fold
SuperFamily	SSF47113	1.21E-35	12	142	IPR009072	Histone-fold
Pfam	PF00808	1.1E-21	14	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000013	anatomy	cauline leaf
PO:0000037	anatomy	shoot apex
PO:0000084	anatomy	plant sperm cell
PO:0000230	anatomy	inflorescence meristem
PO:0000293	anatomy	guard cell
PO:0008019	anatomy	leaf lamina base
PO:0009005	anatomy	root
PO:0009006	anatomy	shoot system
PO:0009009	anatomy	plant embryo
PO:0009010	anatomy	seed
PO:0009025	anatomy	vascular leaf
PO:0009029	anatomy	stamen
PO:0009030	anatomy	carpel
PO:0009031	anatomy	sepal
PO:0009032	anatomy	petal
PO:0009046	anatomy	flower
PO:0009047	anatomy	stem
PO:0009052	anatomy	flower pedicel
PO:0020030	anatomy	cotyledon
PO:0020038	anatomy	petiole
PO:0020100	anatomy	hypocotyl
PO:0020137	anatomy	leaf apex
PO:0025022	anatomy	collective leaf structure
PO:0025195	anatomy	pollen tube cell
PO:0025281	anatomy	pollen
PO:0001054	developmental stage	vascular leaf senescent stage
PO:0001078	developmental stage	plant embryo cotyledonary stage
PO:0001081	developmental stage	mature plant embryo stage
PO:0001185	developmental stage	plant embryo globular stage
PO:0004507	developmental stage	plant embryo bilateral stage
PO:0007064	developmental stage	LP.12 twelve leaves visible stage
PO:0007095	developmental stage	LP.08 eight leaves visible stage
PO:0007098	developmental stage	LP.02 two leaves visible stage
PO:0007103	developmental stage	LP.10 ten leaves visible stage
PO:0007115	developmental stage	LP.04 four leaves visible stage
PO:0007123	developmental stage	LP.06 six leaves visible stage
PO:0007611	developmental stage	petal differentiation and expansion stage
PO:0007616	developmental stage	flowering stage

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESND 60 VCNKEDKRTI APEHVLKALQ VLGFGEYIEE VYAAYEQHKY ETMQDTQRSV KWNPGAQMTE 120 EEAAAEQQRM FAEARARMNG GVSVPQPEHP ETDQRSPQS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	6e-34	12	135	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
At.270	0.0	flower\| root\| seed

Expression -- Microarray ? help Back to Top
Source	ID	E-value
Genevisible	249878_at	0.0
Expression Atlas	AT5G23090	-
AtGenExpress	AT5G23090	-
ATTED-II	AT5G23090	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT5G23090.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT5G23090

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317460	0.0	AK317460.1 Arabidopsis thaliana AT5G23090 mRNA, complete cds, clone: RAFL23-07-M17.
GenBank	ATHDR1B	0.0	D38110.1 Arabidopsis thaliana mRNA for Dr1, complete cds.
GenBank	AY057709	0.0	AY057709.1 Arabidopsis thaliana AT5g23090/MYJ24_8 mRNA, complete cds.
GenBank	AY116960	0.0	AY116960.1 Arabidopsis thaliana AT5g23090/MYJ24_8 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001330452.1	1e-117	nuclear factor Y, subunit B13
Refseq	NP_851060.1	1e-117	nuclear factor Y, subunit B13
Refseq	NP_851061.1	1e-117	nuclear factor Y, subunit B13
Swissprot	P49592	1e-118	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	A0A384KDH6	1e-115	A0A384KDH6_ARATH; NF-YB13
TrEMBL	B9DHA9	1e-115	B9DHA9_ARATH; AT5G23090 protein
STRING	AT5G23090.2	1e-116	(Arabidopsis thaliana)

Link Out ? help Back to Top
Phytozome	AT5G23090.2
Entrez Gene	832373
iHOP	AT5G23090
wikigenes	AT5G23090

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Kersten B, et al. Generation of Arabidopsis protein chips for antibody and serum screening. Plant Mol. Biol., 2003. 52(5): p. 999-1010 [PMID:14558660] Yamada K, et al. Empirical analysis of transcriptional activity in the Arabidopsis genome. Science, 2003. 302(5646): p. 842-6 [PMID:14593172] Bae MS,Cho EJ,Choi EY,Park OK Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Plant J., 2003. 36(5): p. 652-63 [PMID:14617066] Kang JG,Pyo YJ,Cho JW,Cho MH Comparative proteome analysis of differentially expressed proteins induced by K+ deficiency in Arabidopsis thaliana. Proteomics, 2004. 4(11): p. 3549-59 [PMID:15449379] Wang Y, et al. Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. Plant Physiol., 2008. 148(3): p. 1201-11 [PMID:18775970] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Kuromori T,Yamamoto M Cloning of cDNAs from Arabidopsis thaliana that encode putative protein phosphatase 2C and a human Dr1-like protein by transformation of a fission yeast mutant. Nucleic Acids Res., 1994. 22(24): p. 5296-301 [PMID:7816619]