PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G22990.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 324aa    MW: 37312.5 Da    PI: 8.8939
Description C2H2-like zinc finger protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G22990.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-05246269123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  y+Cp+C+ +F ++  +  Hi++ H
  AT5G22990.1 246 YTCPKCNSVFDTSQKFAAHISSmH 269
                  9*******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.182246274IPR007087Zinc finger, C2H2
PROSITE patternPS000280248269IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MTSIPNGLNS YVDDTVNICG FTPIEMSSNL RNHESKMVHS MFNTSDHTNH HGLFSSSRVF  60
NFYQDSHVSS SSFGFNNSHM AYHMRKNMVS TFGMPCITQN SNNPHLSQIS ITQTITNSYS  120
AIVPTYNLIT SQNEYQRAKE PNIFNPPFYP PNFVDKNVGN QCQILNPTPL NTIFPHQASI  180
FPRNVDKFSF SPKQNPHQYV SYRQPLKRHC RPTKKFENTF SDFDSGKDIE YDGRTHSLPY  240
EKYGPYTCPK CNSVFDTSQK FAAHISSMHY KNESIEEKFK RYNARNKKRL RKRNQMIHEE  300
SNNIQPEEIV AEESGGDNNI ASSK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184206260.0
Genevisible249857_at0.0
Expression AtlasAT5G22990-
AtGenExpressAT5G22990-
ATTED-IIAT5G22990-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00523DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G22990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G22990
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ1315170.0AJ131517.1 Arabidopsis thaliana MYB37 homologue gene and ORF1.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_197690.10.0C2H2-like zinc finger protein
TrEMBLQ9FFA90.0Q9FFA9_ARATH; C2H2-like zinc finger protein
STRINGAT5G22990.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Keller T,Abbott J,Moritz T,Doerner P
    Arabidopsis REGULATOR OF AXILLARY MERISTEMS1 controls a leaf axil stem cell niche and modulates vegetative development.
    Plant Cell, 2006. 18(3): p. 598-611
    [PMID:16473968]