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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G21960.1 | ||||||||
Common Name | ERF016, T6G21.22 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 216aa MW: 24400.5 Da PI: 4.3814 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.3e-19 | 5 | 55 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr +k +g+WvAeIr p++ r r++lg+f++ae+Aa+a +aa +l+g AT5G21960.1 5 PKYTGVRKRK-WGKWVAEIRLPNS---RDRIWLGSFDSAEKAARAFDAALYCLRG 55 79*****999.**********933...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.7E-12 | 5 | 55 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.87E-29 | 5 | 65 | No hit | No description |
SMART | SM00380 | 6.0E-31 | 6 | 69 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.68 | 6 | 63 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-20 | 6 | 64 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-29 | 6 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-9 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-9 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MDASPKYTGV RKRKWGKWVA EIRLPNSRDR IWLGSFDSAE KAARAFDAAL YCLRGPGARF 60 NFPDNPPEIP GGRSLTPQQI QVVASRFACE EELLPPEQHH PSPPRGDHNT EEEVIISARG 120 EINSGSGGPT LGQVGEDNNN EGNSNDTSSY WPLIWEEENF VGPPNSDHEF GFFTDDSTNL 180 YFPTQQQQQH QLSSDFYYDG ACEDDFSHYN INLWNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-15 | 6 | 63 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.45636 | 0.0 | seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145361152 | 0.0 | ||||
Expression Atlas | AT5G21960 | - | ||||
AtGenExpress | AT5G21960 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G21960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G21960 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC140977 | 0.0 | AC140977.1 Arabidopsis thaliana chromosome 5 BAC F13M11 genomic sequence, complete sequence. | |||
GenBank | AL589883 | 0.0 | AL589883.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T6G21 (ESSA project). | |||
GenBank | AY560866 | 0.0 | AY560866.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g21960) mRNA, complete cds. | |||
GenBank | BT011577 | 0.0 | BT011577.1 Arabidopsis thaliana At5g21960 mRNA, complete cds. | |||
GenBank | BT012243 | 0.0 | BT012243.1 Arabidopsis thaliana At5g21960 gene, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_680184.1 | 1e-161 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | Q9C591 | 1e-162 | ERF16_ARATH; Ethylene-responsive transcription factor ERF016 | ||||
TrEMBL | A0A178UUL3 | 1e-160 | A0A178UUL3_ARATH; Uncharacterized protein | ||||
STRING | AT5G21960.1 | 1e-161 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14167 | 14 | 24 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
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Phytozome | AT5G21960.1 |
Entrez Gene | 832256 |
iHOP | AT5G21960 |
wikigenes | AT5G21960 |