PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G18960.1
Common NameF17K4.210, FRS12
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family FAR1
Protein Properties Length: 788aa    MW: 90496.8 Da    PI: 7.1213
Description FAR1-related sequence 12
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G18960.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.76e-2157131189
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                  +fYn+YA ++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rtgC+a ++v+++++gkw+++++++eHnHel
  AT5G18960.1  57 EFYNAYAARTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 131
                  6***************************************876..............589***************************98 PP
2FAR167.63.1e-21225301191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  +fY++YA+ vGF+vr+ +  +sk +g+it+r+fvCs+eg+++++              r+gC a +++k++++g w v++l+++HnH+l p
  AT5G18960.1 225 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSREGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHDLEP 301
                  6***************************************9994..............799***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-1657131IPR004330FAR1 DNA binding domain
PfamPF031011.0E-16225301IPR004330FAR1 DNA binding domain
PfamPF105511.1E-24400492IPR018289MULE transposase domain
PROSITE profilePS5096610.361674710IPR007527Zinc finger, SWIM-type
PfamPF044341.1E-7682707IPR007527Zinc finger, SWIM-type
SMARTSM005753.1E-8685712IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009639Biological Processresponse to red or far red light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MESVDTELTS FNNMVAKSSY PVRILHHNNG ISEDEEGGSG VEPYVGLEFD TAEEAREFYN  60
AYAARTGFKV RTGQLYRSRT DGTVSSRRFV CSKEGFQLNS RTGCTAFIRV QRRDTGKWVL  120
DQIQKEHNHE LGGEGSVEET TPRPSRAPAP TKLGVTVNPH RPKMKVVDES DRETRSCPGG  180
FKRFKGGGGE GEVSDDHHQT QQAKAVTGTE PYAGLEFGSA NEACQFYQAY AEVVGFRVRI  240
GQLFRSKVDG SITSRRFVCS REGFQHPSRM GCGAYMRIKR QDSGGWIVDR LNKDHNHDLE  300
PGKKNDAGMK KIPDDGTGGL DSVDLIELND FGNNHIKKTR ENRIGKEWYP LLLDYFQSRQ  360
TEDMGFFYAV ELDVNNGSCM SIFWADSRAR FACSQFGDSV VFDTSYRKGS YSVPFATIIG  420
FNHHRQPVLL GCAMVADESK EAFLWLFQTW LRAMSGRRPR SIVADQDLPI QQALVQVFPG  480
AHHRYSAWQI REKERENLIP FPSEFKYEYE KCIYQTQTIV EFDSVWSALI NKYGLRDDVW  540
LREIYEQREN WVPAYLRASF FAGIPINGTI EPFFGASLDA LTPLREFISR YEQALEQRRE  600
EERKEDFNSY NLQPFLQTKE PVEEQCRRLY TLTVFRIFQN ELVQSYNYLC LKTYEEGAIS  660
RFLVRKCGNE SEKHAVTFSA SNLNSSCSCQ MFEHEGLLCR HILKVFNLLD IRELPSRYIL  720
HRWTKNAEFG FVRDMESGVS AQDLKALMVW SLREAASKYI EFGTSSLEKY KLAYEIMREG  780
GKKLCWQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.223190.0bud| flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453581950.0
Genevisible249953_at0.0
Expression AtlasAT5G18960-
AtGenExpressAT5G18960-
ATTED-IIAT5G18960-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Function -- GeneRIF ? help Back to Top
  1. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    [PMID: 28492275]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G18960.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G18960
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0686550.0AC068655.3 Genomic Sequence For Arabidopsis thaliana Clone F17K4 From Chromosome V, complete sequence.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001330829.10.0FAR1-related sequence 12
RefseqNP_197397.10.0FAR1-related sequence 12
SwissprotQ3E7I50.0FRS12_ARATH; Protein FAR1-RELATED SEQUENCE 12
TrEMBLA0A178UJZ00.0A0A178UJZ0_ARATH; FRS12
STRINGAT5G18960.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57302239
Representative plantOGRP3012351
Publications ? help Back to Top
  1. Lin R,Wang H
    Arabidopsis FHY3/FAR1 gene family and distinct roles of its members in light control of Arabidopsis development.
    Plant Physiol., 2004. 136(4): p. 4010-22
    [PMID:15591448]
  2. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  3. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]