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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT5G18270.1 |
| Common Name | ANAC087 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
NAC |
| Protein Properties |
Length: 335aa MW: 38271.4 Da PI: 6.1133 |
| Description |
Arabidopsis NAC domain containing protein 87 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 179.4 | 9.3e-56 | 21 | 148 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98
lppGfrFhPtdee++++yLk+kv ++++++ ++ e+d++k+ePwdLpk++k +eke yfF++rd+ky+tg r+nrat+sgyWkatgkdke+++ kg
AT5G18270.1 21 LPPGFRFHPTDEEIITCYLKEKVLNSRFTA-VAMGEADLNKCEPWDLPKRAKMGEKEFYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFKGKGC 117
79*************************999.67***************99999*****************************************9*** PP
NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129
lvg+kktLvfy+grapkgekt+Wvmheyrle
AT5G18270.1 118 LVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 148
*****************************85 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0007275 | Biological Process | multicellular organism development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005737 | Cellular Component | cytoplasm |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 335 aa
Download sequence Send
to blast |
MAVVVEEGVV LNHGGEELVD LPPGFRFHPT DEEIITCYLK EKVLNSRFTA VAMGEADLNK 60
CEPWDLPKRA KMGEKEFYFF CQRDRKYPTG MRTNRATESG YWKATGKDKE IFKGKGCLVG 120
MKKTLVFYRG RAPKGEKTNW VMHEYRLEGK YSYYNLPKSA RDEWVVCRVF HKNNPSTTTQ 180
PMTRIPVEDF TRMDSLENID HLLDFSSLPP LIDPSFMSQT EQPNFKPINP PTYDISSPIQ 240
PHHFNSYQSI FNHQVFGSAS GSTYNNNNEM IKMEQSLVSV SQETCLSSDV NANMTTTTEV 300
SSGPVMKQEM GMMGMVNGSK SYEDLCDLRG DLWDF
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| Functional Description ? help
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| Source |
Description |
| UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK228369 | 0.0 | AK228369.1 Arabidopsis thaliana mRNA for no apical meristem (NAM) -like protein, complete cds, clone: RAFL14-80-C22. |
| GenBank | BT005713 | 0.0 | BT005713.1 Arabidopsis thaliana clone RAFL14-80-C22 (R20123) putative NAM (no apical meristem) protein (At5g18270) mRNA, complete cds. |
| GenBank | BT006070 | 0.0 | BT006070.1 Arabidopsis thaliana clone U20123 putative NAM (no apical meristem) protein (At5g18270) mRNA, complete cds. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Ooka H, et al.
Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
DNA Res., 2003. 10(6): p. 239-47
[PMID:15029955] - Guan Y,Nothnagel EA
Binding of arabinogalactan proteins by Yariv phenylglycoside triggers wound-like responses in Arabidopsis cell cultures.
Plant Physiol., 2004. 135(3): p. 1346-66
[PMID:15235117] - Nagata T,Yamada H,Du Z,Todoriki S,Kikuchi S
Microarray analysis of genes that respond to gamma-irradiation in Arabidopsis.
J. Agric. Food Chem., 2005. 53(4): p. 1022-30
[PMID:15713015] - Vanderauwera S, et al.
Genome-wide analysis of hydrogen peroxide-regulated gene expression in Arabidopsis reveals a high light-induced transcriptional cluster involved in anthocyanin biosynthesis.
Plant Physiol., 2005. 139(2): p. 806-21
[PMID:16183842] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Truman W,de Zabala MT,Grant M
Type III effectors orchestrate a complex interplay between transcriptional networks to modify basal defence responses during pathogenesis and resistance.
Plant J., 2006. 46(1): p. 14-33
[PMID:16553893] - Culligan KM,Robertson CE,Foreman J,Doerner P,Britt AB
ATR and ATM play both distinct and additive roles in response to ionizing radiation.
Plant J., 2006. 48(6): p. 947-61
[PMID:17227549] - Fleury D, et al.
The Arabidopsis thaliana homolog of yeast BRE1 has a function in cell cycle regulation during early leaf and root growth.
Plant Cell, 2007. 19(2): p. 417-32
[PMID:17329565] - Zhao J, et al.
Analysis of gene expression profiles in response to Sclerotinia sclerotiorum in Brassica napus.
Planta, 2007. 227(1): p. 13-24
[PMID:17665211] - Ascencio-Ib
Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
Plant Physiol., 2008. 148(1): p. 436-54
[PMID:18650403] - Inz
A subcellular localization compendium of hydrogen peroxide-induced proteins.
Plant Cell Environ., 2012. 35(2): p. 308-20
[PMID:21443605] - Pei H, et al.
An NAC transcription factor controls ethylene-regulated cell expansion in flower petals.
Plant Physiol., 2013. 163(2): p. 775-91
[PMID:23933991] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444]
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