PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Protein Properties

Length: 301aa MW: 34674.7 Da PI: 9.0534

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT5G18090.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.7	4.4e-18	18	109	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffk+l ++d +++ + +p +f++++++ +e s ++ l+ ++g sW +k+ +++++ ++ +kGW +F ++ngL +f++F+++g+++f +v + AT5G18090.1 18 FFKILRSADLSSEIMRGIPLNFIKSISE-EELSAKMLLKVSWGSSWPIKI--CRNPSFyFMEKKGWDQFLSDNGLGNDEFLTFTHQGNMCF--TVDI 109 99*99999999999***99964.57999************..999999556669************************9..6666 PP
2	B3	41	3.4e-13	223	299	15	96
-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 l +pk f e h+ ++e ++ ++ d++g rsW+v +++++++ r + +GW + +k+ gL+ gD+++F+l++ +e++v+v AT5G18090.1 223 FLGIPKMFEELHM--PTEATMFKIHDPEGkRSWDVMYKFSNNQTR--FCAGWIRLAKELGLEIGDVCTFTLIK--PTEMLVRV 299 4679999987776..456779***99889**88888877..668******************987..56667776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.0E-18	11	112	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.53E-18	14	116	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.46E-17	16	110	No hit	No description
SMART	SM01019	4.4E-22	18	113	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.605	18	113	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.3E-16	18	110	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.9E-19	209	299	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.351	209	301	IPR003340	B3 DNA binding domain
CDD	cd10017	9.83E-16	210	297	No hit	No description
Gene3D	G3DSA:2.40.330.10	4.8E-17	210	299	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	2.6E-13	212	300	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.1E-10	223	297	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009009	anatomy	plant embryo
PO:0009010	anatomy	seed
PO:0009029	anatomy	stamen
PO:0009030	anatomy	carpel
PO:0009031	anatomy	sepal
PO:0009032	anatomy	petal
PO:0009046	anatomy	flower
PO:0009052	anatomy	flower pedicel
PO:0020003	anatomy	plant ovule
PO:0025022	anatomy	collective leaf structure
PO:0001078	developmental stage	plant embryo cotyledonary stage
PO:0001185	developmental stage	plant embryo globular stage
PO:0004507	developmental stage	plant embryo bilateral stage
PO:0007611	developmental stage	petal differentiation and expansion stage
PO:0007616	developmental stage	flowering stage

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MKNKAFGQIM DDAENPGFFK ILRSADLSSE IMRGIPLNFI KSISEEELSA KMLLKVSWGS 60 SWPIKICRNP SFYFMEKKGW DQFLSDNGLG NDEFLTFTHQ GNMCFTVDIY QIDGKELLTP 120 RRSATIASSS GRNKREQRNN IYKDVKEEED IESWSESSYP GHKTAESTGR RQRLSLSNKK 180 AKETEKSKKK KMKVESISYD SQDDSLSLVP EFTLTIKKSY LIFLGIPKMF EELHMPTEAT 240 MFKIHDPEGK RSWDVMYKFS NNQTRFCAGW IRLAKELGLE IGDVCTFTLI KPTEMLVRVS 300 K

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	145358160	0.0
Genevisible	250026_at	0.0
Expression Atlas	AT5G18090	-
AtGenExpress	AT5G18090	-
ATTED-II	AT5G18090	-

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00517	DAP	27203113	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT5G18090.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT5G18090

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY087853	0.0	AY087853.1 Arabidopsis thaliana clone 38961 mRNA, complete sequence.
GenBank	BT004099	0.0	BT004099.1 Arabidopsis thaliana clone RAFL15-45-L21 (R20966) unknown protein (At5g18090) mRNA, complete cds.
GenBank	BT005553	0.0	BT005553.1 Arabidopsis thaliana clone U20966 unknown protein (At5g18090) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_197310.1	0.0	AP2/B3-like transcriptional factor family protein
Swissprot	Q9FK61	0.0	Y5809_ARATH; B3 domain-containing protein At5g18090
TrEMBL	A0A178UPJ1	0.0	A0A178UPJ1_ARATH; Uncharacterized protein
STRING	AT5G18090.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM565	21	135

Link Out ? help Back to Top
Phytozome	AT5G18090.1
Entrez Gene	831636
iHOP	AT5G18090
wikigenes	AT5G18090

Publications ? help Back to Top
Yamada K, et al. Empirical analysis of transcriptional activity in the Arabidopsis genome. Science, 2003. 302(5646): p. 842-6 [PMID:14593172] Kamauchi S,Nakatani H,Nakano C,Urade R Gene expression in response to endoplasmic reticulum stress in Arabidopsis thaliana. FEBS J., 2005. 272(13): p. 3461-76 [PMID:15978049] Ohr H,Bui AQ,Le BH,Fischer RL,Choi Y Identification of putative Arabidopsis DEMETER target genes by GeneChip analysis. Biochem. Biophys. Res. Commun., 2007. 364(4): p. 856-60 [PMID:17964287] Yang TJ,Perry PJ,Ciani S,Pandian S,Schmidt W Manganese deficiency alters the patterning and development of root hairs in Arabidopsis. J. Exp. Bot., 2008. 59(12): p. 3453-64 [PMID:18772308] Swaminathan K,Peterson K,Jack T The plant B3 superfamily. Trends Plant Sci., 2008. 13(12): p. 647-55 [PMID:18986826] Skinner DJ,Gasser CS Expression-based discovery of candidate ovule development regulators through transcriptional profiling of ovule mutants. BMC Plant Biol., 2009. 9: p. 29 [PMID:19291320] Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]