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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT5G17320.1 |
Common Name | HDG9, HDGL2-9, MKP11.28 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
HD-ZIP |
Protein Properties |
Length: 718aa MW: 81068.1 Da PI: 7.6263 |
Description |
homeodomain GLABROUS 9 |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 57.7 | 2e-18 | 27 | 82 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++ +++t+eq+++Le++F+++++p++ +r+ L ++l+L+ +q+k+WFqN+R++ k
AT5G17320.1 27 KKGYHRHTNEQIHRLETYFKECPHPDEFQRRLLGEELNLKPKQIKFWFQNKRTQAK 82
5778899**********************************************988 PP
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2 | START | 100.9 | 2.3e-32 | 243 | 461 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
START 3 aeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88
ae+a e++++++ ++ +W+kss ++++++ +++ + + + e +++++vv m++ +l ++l +W + ++ +a+t+ v++s
AT5G17320.1 243 AEKAVSEVLSLIQMDDTMWKKSSiddrlvidPGLYEKYFTKTNTN--G-RPESSKDVVVVQMDAGNLIDIFLTAE-KWARLFPtivnEAKTIHVLDSV 336
789999********************9999555555555555544..4.67**************9999999999.99999999999*********98 PP
.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX..H CS
START 89 .....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp..h 178
++ +++ +l lsplvp R+f+++R+++q ++ +w+i+dvS ++ + s+ ++++pSg li+ ++ g skvtw+ehv ++++ + h
AT5G17320.1 337 dhrgkTFSRVIYEQLHILSPLVPpREFMILRTCQQIEDNVWMIADVSCHLPNIEF-DLSFPICTKRPSGVLIQALPHGFSKVTWIEHVVVNDNRVrpH 433
8999*999999*************************************9999987.9***********************************99888* PP
HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 179 wllrslvksglaegaktwvatlqrqcek 206
l+r l+ g ga++w+ tl+r ce+
AT5G17320.1 434 KLYRDLLYGGFGYGARRWTVTLERTCER 461
**************************96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0008289 | Molecular Function | lipid binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 718 aa
Download sequence Send
to blast |
MDFTRDDNSS DERENDVDAN TNNRHEKKGY HRHTNEQIHR LETYFKECPH PDEFQRRLLG 60 EELNLKPKQI KFWFQNKRTQ AKSHNEKADN AALRAENIKI RRENESMEDA LNNVVCPPCG 120 GRGPGREDQL RHLQKLRAQN AYLKDEYERV SNYLKQYGGH SMHNVEATPY LHGPSNHAST 180 SKNRPALYGT SSNRLPEPSS IFRGPYTRGN MNTTAPPQPR KPLEMQNFQP LSQLEKIAML 240 EAAEKAVSEV LSLIQMDDTM WKKSSIDDRL VIDPGLYEKY FTKTNTNGRP ESSKDVVVVQ 300 MDAGNLIDIF LTAEKWARLF PTIVNEAKTI HVLDSVDHRG KTFSRVIYEQ LHILSPLVPP 360 REFMILRTCQ QIEDNVWMIA DVSCHLPNIE FDLSFPICTK RPSGVLIQAL PHGFSKVTWI 420 EHVVVNDNRV RPHKLYRDLL YGGFGYGARR WTVTLERTCE RLIFSTSVPA LPNNDNPGVV 480 QTIRGRNSVM HLGERMLRNF AWMMKMVNKL DFSPQSETNN SGIRIGVRIN NEAGQPPGLI 540 VCAGSSLSLP LPPVQVYDFL KNLEVRHQWD VLCHGNPATE AARFVTGSNP RNTVSFLEPS 600 IRDINTKLMI LQDSFKDALG GMVAYAPMDL NTACAAISGD IDPTTIPILP SGFMISRDGR 660 PSEGEAEGGS YTLLTVAFQI LVSGPSYSPD TNLEVSATTV NTLISSTVQR IKAMLKCE
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in anthers with highest levels in the tapetum and pollen grains, and chalazal end of the embryo sac. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help
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Source |
Description |
TAIR | Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. |
UniProt | Probable transcription factor that binds to the DNA sequence 5'-GCATTAAATGCGCA-3'. {ECO:0000269|PubMed:16778018}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB005238 | 0.0 | AB005238.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKP11. |
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Publications
? help Back to Top |
- Tavares R,Aubourg S,Lecharny A,Kreis M
Organization and structural evolution of four multigene families in Arabidopsis thaliana: AtLCAD, AtLGT, AtMYST and AtHD-GL2. Plant Mol. Biol., 2000. 42(5): p. 703-17 [PMID:10809443] - Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Schrick K,Nguyen D,Karlowski WM,Mayer KF
START lipid/sterol-binding domains are amplified in plants and are predominantly associated with homeodomain transcription factors. Genome Biol., 2004. 5(6): p. R41 [PMID:15186492] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Nakamura M, et al.
Characterization of the class IV homeodomain-Leucine Zipper gene family in Arabidopsis. Plant Physiol., 2006. 141(4): p. 1363-75 [PMID:16778018] - Kawanabe T,Fujimoto R,Sasaki T,Taylor JM,Dennis ES
A comparison of transcriptome and epigenetic status between closely related species in the genus Arabidopsis. Gene, 2012. 506(2): p. 301-9 [PMID:22796129]
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