 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
AT5G10570.1 |
| Common Name | BHLH61, EN46, F12B17.80 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
bHLH |
| Protein Properties |
Length: 315aa MW: 35554.2 Da PI: 4.7971 |
| Description |
bHLH family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 39.3 | 1.1e-12 | 153 | 196 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++ErrRR+r+N++++ Lr+++Pk +K++ +iL A++Y+k+L
AT5G10570.1 153 LMAERRRRKRLNDRLSLLRSIVPKI-----TKMDRTSILGDAIDYMKEL 196
589*********************7.....6****************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 315 aa
Download sequence Send
to blast |
METELTQLRK QESNNLNGVN GGFMAIDQFV PNDWNFDYLC FNNLLQEDDN IDHPSSSSLM 60
NLISQPPPLL HQPPQPSSPL YDSPPLSSAF DYPFLEDIIH SSYSPPPLIL PASQENTNNY 120
SPLMEESKSF ISIGETNKKR SNKKLEGQPS KNLMAERRRR KRLNDRLSLL RSIVPKITKM 180
DRTSILGDAI DYMKELLDKI NKLQEDEQEL GSNSHLSTLI TNESMVRNSL KFEVDQREVN 240
THIDICCPTK PGLVVSTVST LETLGLEIEQ CVISCFSDFS LQASCFEVGE QRYMVTSEAT 300
KQALIRNAGY GGRCL
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 137 | 159 | KKRSNKKLEGQPSKNLMAERRRR |
| 2 | 155 | 162 | ERRRRKRL |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed constitutively in leaves and flowers. {ECO:0000269|PubMed:12679534}. |
| Function -- GeneRIF ? help
Back to Top |
- AtVip2 (At5g10570) is differentially expressed in plant tissues and play a role in inositol pyrophosphate synthesis
[PMID: 25231822]
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AF488594 | 0.0 | AF488594.1 Arabidopsis thaliana clone bHLH061 putative bHLH transcription factor mRNA, complete cds. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Sorensen AM, et al.
The Arabidopsis ABORTED MICROSPORES (AMS) gene encodes a MYC class transcription factor.
Plant J., 2003. 33(2): p. 413-23
[PMID:12535353] - Chinnusamy V, et al.
ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis.
Genes Dev., 2003. 17(8): p. 1043-54
[PMID:12672693] - Heim MA, et al.
The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
Mol. Biol. Evol., 2003. 20(5): p. 735-47
[PMID:12679534] - Toledo-Ortiz G,Huq E,Quail PH
The Arabidopsis basic/helix-loop-helix transcription factor family.
Plant Cell, 2003. 15(8): p. 1749-70
[PMID:12897250] - Bailey PC, et al.
Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
Plant Cell, 2003. 15(11): p. 2497-502
[PMID:14600211] - Czechowski T,Bari RP,Stitt M,Scheible WR,Udvardi MK
Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes.
Plant J., 2004. 38(2): p. 366-79
[PMID:15078338] - Scheible WR, et al.
Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen.
Plant Physiol., 2004. 136(1): p. 2483-99
[PMID:15375205] - Efroni I, et al.
Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
Dev. Cell, 2013. 24(4): p. 438-45
[PMID:23449474] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Desai M, et al.
Two inositol hexakisphosphate kinases drive inositol pyrophosphate synthesis in plants.
Plant J., 2014. 80(4): p. 642-53
[PMID:25231822]
|
