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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT5G10280.1 |
| Common Name | ATMYB64, ATMYB92, F18D22_50, MYB92 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
MYB |
| Protein Properties |
Length: 334aa MW: 37653 Da PI: 6.1765 |
| Description |
myb domain protein 92 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 60.5 | 3.5e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT++Ede+lv++v+++G +W++ ++ g++R++k+c++rw +yl
AT5G10280.1 14 KGPWTPDEDEKLVNYVQKHGHSSWRALPKLAGLNRCGKSCRLRWTNYL 61
79********************************************97 PP
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| 2 | Myb_DNA-binding | 53.8 | 4.4e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rgr++++E++ +++++ lG++ W+tIa+ ++ gRt++++k++w+++l
AT5G10280.1 67 RGRFSPDEEQTILNLHSVLGNK-WSTIANQLP-GRTDNEIKNFWNTHL 112
89********************.*********.************996 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
| GO:0009751 | Biological Process | response to salicylic acid |
| GO:0009753 | Biological Process | response to jasmonic acid |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding |
| GO:0001135 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor recruiting |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 334 aa
Download sequence Send
to blast |
MGRSPISDDS GLKKGPWTPD EDEKLVNYVQ KHGHSSWRAL PKLAGLNRCG KSCRLRWTNY 60
LRPDIKRGRF SPDEEQTILN LHSVLGNKWS TIANQLPGRT DNEIKNFWNT HLKKKLIQMG 120
FDPMTHRPRT DIFSGLSQLM SLSSNLRGFV DLQQQFPIDQ EHTILKLQTE MAKLQLFQYL 180
LQPSSMSNNV NPNDFDTLSL LNSIASFKET SNNTTSNNLD LGFLGSYLQD FHSLPSLKTL 240
NSNMEPSSVF PQNLDDNHFK FSTQRENLPV SPIWLSDPSS TTPAHVNDDL IFNQYGIEDV 300
NSNITSSSGQ ESGASASAAW PDHLLDDSIF SDIP
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems, flowers and siliques. {ECO:0000269|PubMed:24902892}. |
| Functional Description ? help
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| Source |
Description |
| TAIR | Encodes a putative transcription factor (MYB92). |
| UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY519619 | 0.0 | AY519619.1 Arabidopsis thaliana MYB transcription factor (At5g10280) mRNA, complete cds. |
| GenBank | BT002877 | 0.0 | BT002877.1 Arabidopsis thaliana clone RAFL14-88-D17 (R20400) putative myb family transcription factor (At5g10280) mRNA, complete cds. |
| GenBank | BT004402 | 0.0 | BT004402.1 Arabidopsis thaliana clone U20400 putative myb family transcription factor (At5g10280) mRNA, complete cds. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM4 | 28 | 2646 |
| Representative plant | OGRP5 | 17 | 1784 |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Stracke R,Werber M,Weisshaar B
The R2R3-MYB gene family in Arabidopsis thaliana.
Curr. Opin. Plant Biol., 2001. 4(5): p. 447-56
[PMID:11597504] - Ma L, et al.
Genomic evidence for COP1 as a repressor of light-regulated gene expression and development in Arabidopsis.
Plant Cell, 2002. 14(10): p. 2383-98
[PMID:12368493] - Nikiforova V, et al.
Transcriptome analysis of sulfur depletion in Arabidopsis thaliana: interlacing of biosynthetic pathways provides response specificity.
Plant J., 2003. 33(4): p. 633-50
[PMID:12609038] - Rogers LA, et al.
Comparison of lignin deposition in three ectopic lignification mutants.
New Phytol., 2005. 168(1): p. 123-40
[PMID:16159327] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Yanhui C, et al.
The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
Plant Mol. Biol., 2006. 60(1): p. 107-24
[PMID:16463103] - Efroni I, et al.
Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
Dev. Cell, 2013. 24(4): p. 438-45
[PMID:23449474] - Kranz HD, et al.
Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana.
Plant J., 1998. 16(2): p. 263-76
[PMID:9839469]
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