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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT5G06710.1 |
Common Name | HAT14, MPH15.6 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
HD-ZIP |
Protein Properties |
Length: 336aa MW: 37603.2 Da PI: 8.273 |
Description |
homeobox from Arabidopsis thaliana |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 56.3 | 5.3e-18 | 189 | 243 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q Le+ F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k
AT5G06710.1 189 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTK 243
678899***********************************************98 PP
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2 | HD-ZIP_I/II | 128.4 | 3e-41 | 189 | 278 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rlsk+q+++LE+sF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
AT5G06710.1 189 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELR-TL 278
69*************************************************************************************9.55 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 336 aa
Download sequence Send
to blast |
MELALSLGDN TKKQFSFMEK NSKINNPSVS STSTSEKDLG FCMALDVAFG GHRSLSSSSS 60 PSVEDEKKKP APRAKKSDEF RVSSSVDPPL QLQLHFPNWL PENSKGRQGG RMPLGAATVV 120 EEEEEEEEAV PSMSVSPPDS VTSSFQLDFG IKSYGYERRS NKRDIDDEVE RSASRASNED 180 NDDENGSTRK KLRLSKDQSA FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA 240 RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRTLKT STPFYMQLPA TTLTMCPSCE 300 RVATSAAQPS TSAAHNLCLS TSSLIPVKPR PAKQVS
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 187 | 193 | TRKKLRL |
2 | 237 | 245 | RRARTKLKQ |
Functional Description ? help
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Source |
Description |
TAIR | Homeobox-leucine zipper protein. |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AJ431182 | 0.0 | AJ431182.2 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT14 (hat14 gene). |
GenBank | AK227423 | 0.0 | AK227423.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL14-07-H22. |
Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Schena M,Davis RW
HD-Zip proteins: members of an Arabidopsis homeodomain protein superfamily. Proc. Natl. Acad. Sci. U.S.A., 1992. 89(9): p. 3894-8 [PMID:1349174] - Yamada K, et al.
Empirical analysis of transcriptional activity in the Arabidopsis genome. Science, 2003. 302(5646): p. 842-6 [PMID:14593172] - Henriksson E, et al.
Homeodomain leucine zipper class I genes in Arabidopsis. Expression patterns and phylogenetic relationships. Plant Physiol., 2005. 139(1): p. 509-18 [PMID:16055682] - Ascencio-Ib
Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. Plant Physiol., 2008. 148(1): p. 436-54 [PMID:18650403] - Arabidopsis Interactome Mapping Consortium
Evidence for network evolution in an Arabidopsis interactome map. Science, 2011. 333(6042): p. 601-7 [PMID:21798944] - Schena M,Davis RW
Structure of homeobox-leucine zipper genes suggests a model for the evolution of gene families. Proc. Natl. Acad. Sci. U.S.A., 1994. 91(18): p. 8393-7 [PMID:7915839]
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