PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT5G06500.1 | ||||||||
Common Name | AGL96 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 242aa MW: 27297.9 Da PI: 4.7785 | ||||||||
Description | AGAMOUS-like 96 | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.3 | 4e-13 | 11 | 59 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyeys 50 i +++ r ++ +R++g++KK +ELS+LCd++++v++f + +l ++ AT5G06500.1 11 IRDDRMRRASLKRRLTGLIKKVNELSILCDMRASVVVFNREeEQLTAWP 59 789999********************************86514566666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.292 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.9E-10 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.53E-24 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 7.0E-6 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.62E-19 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-12 | 11 | 55 | IPR002100 | Transcription factor, MADS-box |
Gene3D | G3DSA:3.30.450.20 | 6.5E-4 | 19 | 80 | No hit | No description |
PRINTS | PR00404 | 7.0E-6 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-6 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MARKKVRAAW IRDDRMRRAS LKRRLTGLIK KVNELSILCD MRASVVVFNR EEEQLTAWPS 60 PEAANSLIDN FYSLTDHERT MKAVDPESYV QTVIEKIEKK RADTRKVITE FEMDELMFQV 120 QNGRELADLS PTEADKLIPY ADKKLMWLSK RMGSTGVDAL RASNVASGSG GNGLNMMETG 180 RSFYYVDKWV FVDPQVQNPC DVETHLPTMV SGLDLNMEPS DEDLGTYKGE SSMAGGAEDD 240 AE |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
Genevisible | 250731_at | 0.0 | ||||
Expression Atlas | AT5G06500 | - | ||||
AtGenExpress | AT5G06500 | - | ||||
ATTED-II | AT5G06500 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT5G06500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Intact With | |||||
BioGRID | AT1G48150, AT1G77980 |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT5G06500 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP002543 | 0.0 | AP002543.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15M7. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | DQ056672 | 0.0 | DQ056672.1 Arabidopsis thaliana MADS-box family protein (At5g06500) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_196268.1 | 0.0 | AGAMOUS-like 96 | ||||
TrEMBL | Q9FG20 | 1e-179 | Q9FG20_ARATH; AGAMOUS-like 96 | ||||
STRING | AT5G06500.1 | 1e-180 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8774 | 13 | 32 | Representative plant | OGRP114 | 13 | 173 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT5G06500.1 |
Entrez Gene | 830538 |
iHOP | AT5G06500 |
wikigenes | AT5G06500 |