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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT5G06070.1 |
| Common Name | K16F4.3, RAB, RBE |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
C2H2 |
| Protein Properties |
Length: 226aa MW: 25337.6 Da PI: 7.8286 |
| Description |
C2H2 family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 17.3 | 1.3e-05 | 55 | 77 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C+ Cg+ F++ L H+++H
AT5G06070.1 55 YSCSFCGREFKSAQALGGHMNVH 77
99*******************99 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009409 | Biological Process | response to cold |
| GO:0009934 | Biological Process | regulation of meristem structural organization |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0048441 | Biological Process | petal development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 226 aa
Download sequence Send
to blast |
MMDRGECLMS MKLRPMVTRP SSDGTLFWPF REERAFASAE EYGGGGGCMW PPRSYSCSFC 60
GREFKSAQAL GGHMNVHRRD RARLKQQSLS PSSTDQATPP ECDRQQQVLD VGSKVLVQEE 120
TRKPNGTKRE ISDVCNNNVL ESSMKRYEHD NGEVKTDLSV GLLSTEFDPR KKQLINGSSS 180
SWKRAKTDVS RFPMMLGLVI GISEINGHHE ELDLELRLGA DPPKVN
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Not expressed in the inflorescence meristem or in the flowers at stages 1 and 2. First expressed in the precursor cells of petal primordia in stage 3 flowers and in the developing petal primordia up to stage 6. Not expressed at later stages. {ECO:0000269|PubMed:14681191}. |
| Uniprot | TISSUE SPECIFICITY: Strongly expressed in inflorescences and flowers, and weakly in siliques, seedlings and roots. In flowers, it is expressed in petal primordia and their precursor cells. Also expressed in the lateral root caps and the basal cells of lateral roots. {ECO:0000269|PubMed:14681191}. |
| Functional Description ? help
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| Source |
Description |
| TAIR | Isolated as a mutation defective in petal development with specific effects on adaxial petals which are filamentous or absent. Encodes a Superman (SUP) like protein with zinc finger motifs. Transcript is detected in petal primordia and protein is localized to the nucleus. |
| UniProt | Probable transcriptional regulator essential for petal development. Required for the early development of the organ primordia of the second whorl. Acts downstream of AP1 and PTL. {ECO:0000269|PubMed:14681191}. |
| Function -- GeneRIF ? help
Back to Top |
- RBE acts to maintain two different types of spatial boundaries in young flowers: boundaries between organ primordia within a whorl and boundaries of homeotic gene expression between whorls.
[PMID: 16412084] - These results indicate that one role of RBE is to fine-tune miR164 expression to regulate the CUC1 and CUC2 effector genes, which, in turn, regulate developmental events required for sepal and petal organogenesis.
[PMID: 22573623] - restriction of expression to the petal precursor cells crucial for flower development
[PMID: 24366683] - RBE promotes cell division and negatively regulates the expression of TCP5, TCP13, and TCP17 in young petals.
[PMID: 26073137] - regulates the transcription of TCP4 during petal development
[PMID: 27838638]
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| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB107371 | 0.0 | AB107371.1 Arabidopsis thaliana RBE mRNA for one finger-type zinc finger protein for RABBIT EARS, complete cds. |
| GenBank | AP002030 | 0.0 | AP002030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16F4. |
| GenBank | AY088861 | 0.0 | AY088861.1 Arabidopsis thaliana clone 97505 mRNA, complete sequence. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Takeda S,Matsumoto N,Okada K
RABBIT EARS, encoding a SUPERMAN-like zinc finger protein, regulates petal development in Arabidopsis thaliana.
Development, 2004. 131(2): p. 425-34
[PMID:14681191] - Krizek BA,Lewis MW,Fletcher JC
RABBIT EARS is a second-whorl repressor of AGAMOUS that maintains spatial boundaries in Arabidopsis flowers.
Plant J., 2006. 45(3): p. 369-83
[PMID:16412084] - Haas TJ, et al.
The Arabidopsis AAA ATPase SKD1 is involved in multivesicular endosome function and interacts with its positive regulator LYST-INTERACTING PROTEIN5.
Plant Cell, 2007. 19(4): p. 1295-312
[PMID:17468262] - Gon
PpRab1, a Rab GTPase from maritime pine is differentially expressed during embryogenesis.
Mol. Genet. Genomics, 2007. 278(3): p. 273-82
[PMID:17562081] - Dacks JB,Poon PP,Field MC
Phylogeny of endocytic components yields insight into the process of nonendosymbiotic organelle evolution.
Proc. Natl. Acad. Sci. U.S.A., 2008. 105(2): p. 588-93
[PMID:18182495] - Alvim Kamei CL, et al.
The PRA1 gene family in Arabidopsis.
Plant Physiol., 2008. 147(4): p. 1735-49
[PMID:18583532] - Irish VF
The flowering of Arabidopsis flower development.
Plant J., 2010. 61(6): p. 1014-28
[PMID:20409275] - Heo JB,Yi YB,Bahk JD
Rice GDP dissociation inhibitor 3 inhibits OsMAPK2 activity through physical interaction.
Biochem. Biophys. Res. Commun., 2011. 414(4): p. 814-9
[PMID:22020099] - Huang T,L
RBE controls microRNA164 expression to effect floral organogenesis.
Development, 2012. 139(12): p. 2161-9
[PMID:22573623] - Lampugnani ER,Kilinc A,Smyth DR
Auxin controls petal initiation in Arabidopsis.
Development, 2013. 140(1): p. 185-94
[PMID:23175631] - Takeda S,Noguchi M,Hamamura Y,Higashiyama T
Spatial distribution of the RABBIT EARS protein and effects of its ectopic expression in Arabidopsis thaliana flowers.
Planta, 2014. 239(3): p. 707-15
[PMID:24366683] - Jin J, et al.
An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors.
Mol. Biol. Evol., 2015. 32(7): p. 1767-73
[PMID:25750178] - Huang T,Irish VF
Temporal Control of Plant Organ Growth by TCP Transcription Factors.
Curr. Biol., 2015. 25(13): p. 1765-70
[PMID:26073137] - Li J, et al.
RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis.
J. Exp. Bot., 2016. 67(22): p. 6473-6480
[PMID:27838638] - Lång V,Palva ET
The expression of a rab-related gene, rab 18, is induced by abscisic acid during the cold acclimation process of Arabidopsis thaliana (L.) Heynh.
Plant Mol. Biol., 1993. 21(3): p. 581-2
[PMID:8443352]
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