PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G05550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 246aa MW: 28191.8 Da PI: 9.0214 | ||||||||
Description | sequence-specific DNA binding transcription factors | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 35.3 | 3e-11 | 24 | 106 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++ + +L+ea ++ +l+ g+l++++W++v++++ + +++ qCk++ + l+k+yk +k+ + st++++++l+ AT5G05550.1 24 WSEEATATLVEAWGNRYVKLNHGNLRQNDWKDVADAVnsrhGDNSRKKTDLQCKNRVDTLKKKYKTEKAKLSP------STWRFYNRLD 106 *************************************86544445577999*****************99986......68****9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 8.0E-23 | 22 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
METTTPQSKS SVSHRPPLGR EDWWSEEATA TLVEAWGNRY VKLNHGNLRQ NDWKDVADAV 60 NSRHGDNSRK KTDLQCKNRV DTLKKKYKTE KAKLSPSTWR FYNRLDVLIG PVVKKSAGGV 120 VKSAPFKNHL NPTGSNSTGS SLEDDDEDDD EVGDWEFVAR KHPRVEEVDL SEGSTCRELA 180 TAILKFGEVY ERIEGKKQQM MIELEKQRME VTKEVELKRM NMLMEMQLEI EKSKHRKRAS 240 ASGKQL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.8721 | 0.0 | flower| leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 250766_at | 0.0 | ||||
Expression Atlas | AT5G05550 | - | ||||
AtGenExpress | AT5G05550 | - | ||||
ATTED-II | AT5G05550 | - |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00488 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G05550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G05550 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY045635 | 0.0 | AY045635.1 Arabidopsis thaliana AT5g05550/MOP10_9 mRNA, complete cds. | |||
GenBank | AY059651 | 0.0 | AY059651.1 Arabidopsis thaliana AT5g05550/MOP10_9 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_568158.1 | 0.0 | sequence-specific DNA binding transcription factor | ||||
TrEMBL | Q94AX7 | 0.0 | Q94AX7_ARATH; AT5g05550/MOP10_9 | ||||
STRING | AT5G05550.2 | 1e-180 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT5G05550.1 |
Entrez Gene | 830438 |
iHOP | AT5G05550 |
wikigenes | AT5G05550 |
Publications ? help Back to Top | |||
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