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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT5G04760.1 |
Common Name | T1E3_120 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
MYB |
Protein Properties |
Length: 215aa MW: 24407.1 Da PI: 6.8071 |
Description |
MYB family protein |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 22.2 | 3.2e-07 | 5 | 49 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
WT Ed+ + +a +++ g +W++Ia + +++ ++++++
AT5G04760.1 5 QWTRSEDKMFEQALVLFPEGspnRWERIADQLH--KSAGEVREHYEV 49
7*******************************7..9********965 PP
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2 | Myb_DNA-binding | 43 | 1.1e-13 | 100 | 144 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+WT+ E++l++ + k++G+g+W++I+r + +Rt+ q+ s+ qky
AT5G04760.1 100 PWTENEHKLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKY 144
8*******************************************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 215 aa
Download sequence Send
to blast |
MASSQWTRSE DKMFEQALVL FPEGSPNRWE RIADQLHKSA GEVREHYEVL VHDVFEIDSG 60 RVDVPDYMDD SAAAAAGWDS AGQISFGSKH GESERKRGTP WTENEHKLFL IGLKRYGKGD 120 WRSISRNVVV TRTPTQVASH AQKYFLRQNS VKKERKRSSI HDITTVDATL AMPGSNMDWT 180 GQHGSPVQAP QQQQIMSEFG QQLNPGHFED FGFRM
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
At.68528 | 0.0 | floral meristem| flower| leaf| root| seed| silique |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}. |
Functional Description ? help
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Source |
Description |
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Function -- GeneRIF ? help
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- The results suggest that the R-R-type MYB TF AtDIV2 plays negative roles in salt stress and is required for abscisic acid (ABA) signaling in Arabidopsis.
[PMID: 30014159]
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY050976 | 0.0 | AY050976.1 Arabidopsis thaliana putative I-box binding factor (At5g04760) mRNA, complete cds. |
GenBank | AY091177 | 0.0 | AY091177.1 Arabidopsis thaliana putative I-box binding factor (At5g04760) mRNA, complete cds. |
Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Galego L,Almeida J
Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] - Yanhui C, et al.
The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. Plant Mol. Biol., 2006. 60(1): p. 107-24 [PMID:16463103] - Truman W,de Zabala MT,Grant M
Type III effectors orchestrate a complex interplay between transcriptional networks to modify basal defence responses during pathogenesis and resistance. Plant J., 2006. 46(1): p. 14-33 [PMID:16553893] - Peng M,Bi YM,Zhu T,Rothstein SJ
Genome-wide analysis of Arabidopsis responsive transcriptome to nitrogen limitation and its regulation by the ubiquitin ligase gene NLA. Plant Mol. Biol., 2007. 65(6): p. 775-97 [PMID:17885809] - Ascencio-Ib
Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. Plant Physiol., 2008. 148(1): p. 436-54 [PMID:18650403] - Wang Y, et al.
Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. Plant Physiol., 2008. 148(3): p. 1201-11 [PMID:18775970] - Machemer K, et al.
Interplay of MYB factors in differential cell expansion, and consequences for tomato fruit development. Plant J., 2011. 68(2): p. 337-50 [PMID:21707804] - Arabidopsis Interactome Mapping Consortium
Evidence for network evolution in an Arabidopsis interactome map. Science, 2011. 333(6042): p. 601-7 [PMID:21798944] - Fang Q, et al.
AtDIV2, an R-R-type MYB transcription factor of Arabidopsis, negatively regulates salt stress by modulating ABA signaling. Plant Cell Rep., 2018. 37(11): p. 1499-1511 [PMID:30014159] - Almeida J,Rocheta M,Galego L
Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]
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