PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G03680.1 | ||||||||
Common Name | F17C15.100, PTL | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 591aa MW: 66638.8 Da PI: 7.0831 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 94.5 | 1e-29 | 119 | 204 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+y+k+keg+ +r ++ +++++f+qlea AT5G03680.1 119 RWPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYRKTKEGKAGR--QDGKHYRFFRQLEA 204 8*************************************999*****************************98..55667*******85 PP | |||||||
2 | trihelix | 66.9 | 4.1e-21 | 421 | 506 | 1 | 82 |
trihelix 1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +W +qe+l+L+e+r++m++++++ g++++ lWee+++k+ + gf +rs+ Ckekwe++++ ++k+k++ +k+++++ss+c + AT5G03680.1 421 CWGEQEILKLMEIRTSMDSTFQEilgGCSDEFLWEEIAAKLIQLGFdQRSALLCKEKWEWISNGMRKEKKQINKKRKDNSSSCGVY 506 7*********************98889*******************999********************99999989999998655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.98 | 118 | 177 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 2.6E-20 | 119 | 205 | No hit | No description |
CDD | cd12203 | 2.82E-19 | 119 | 184 | No hit | No description |
Pfam | PF13837 | 2.3E-12 | 420 | 506 | No hit | No description |
CDD | cd12203 | 1.13E-19 | 420 | 489 | No hit | No description |
PROSITE profile | PS50090 | 6.028 | 422 | 479 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046621 | Biological Process | negative regulation of organ growth | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048498 | Biological Process | establishment of petal orientation | ||||
GO:0090428 | Biological Process | perianth development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000229 | anatomy | flower meristem | ||||
PO:0005021 | anatomy | sepal margin | ||||
PO:0009005 | anatomy | root | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007131 | developmental stage | seedling development stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MDQDQHPQYG IPELRQLMKG GGRTTTTTPS TSSHFPSDFF GFNLAPVQPP PHRLHQFTTD 60 QDMGFLPRGI HGLGGGSSTA GNNSNLNAST SGGGVGFSGF LDGGGFGSGV GGDGGGTGRW 120 PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY 180 RKTKEGKAGR QDGKHYRFFR QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT 240 TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT 300 NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD 360 VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ NENGSDQTMT NNVCVKGSSS 420 CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW 480 ISNGMRKEKK QINKKRKDNS SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS 540 TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145357603 | 0.0 | ||||
Genevisible | 250908_at | 0.0 | ||||
Expression Atlas | AT5G03680 | - | ||||
AtGenExpress | AT5G03680 | - | ||||
ATTED-II | AT5G03680 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First observed in the early-developing flower, in four zones between the initiating sepals and in their developing margins. Later detected in the margins of expanding sepals, petals and stamens, and in the leaf margins. {ECO:0000269|PubMed:15269176}. | |||||
Uniprot | TISSUE SPECIFICITY: Confined to flowers, at low levels. Also present in 7-days-old seedlings. Barely detectable in other tissues such as young seedlings, roots, stems, leaves and siliques (PubMed:15269176). Expressed in flower primordia, more precisely between newly arisen sepal primordia and also at the basal margins of developing sepals (PubMed:25697797). {ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:25697797}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Recessive mutations are defective in organ initiation and orientation in the second whorl. This gene encodes a trihelix transcription factor whose expression is limited to margins of floral and vegetative organs. Overexpression and double mutant analyses suggest that this gene is involved in limiting lateral growth of organs. | |||||
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G03680.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Regulation -- ATRM (Manually Curated Upstream Regulators) ? help Back to Top | ||||||
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Source | Upstream Regulator (A: Activate/R: Repress) | |||||
ATRM | AT1G65620 (R), AT2G37630 (R) |
Regulation -- ATRM (Manually Curated Target Genes) ? help Back to Top | ||||||
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Source | Target Gene (A: Activate/R: Repress) | |||||
ATRM | AT5G06070(A) |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT5G03680 |
Phenotype -- Disruption Phenotype ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DISRUPTION PHENOTYPE: Disrupted perianth development, particularly petal initiation and orientation, sometimes leading to petal fusion. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176}. |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G03680 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY555728 | 0.0 | AY555728.1 Arabidopsis thaliana trihelix transcription factor (PETAL LOSS) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_195988.1 | 0.0 | Duplicated homeodomain-like superfamily protein | ||||
Swissprot | Q9LZS0 | 0.0 | PTL_ARATH; Trihelix transcription factor PTL | ||||
TrEMBL | A0A178U774 | 0.0 | A0A178U774_ARATH; PTL | ||||
STRING | AT5G03680.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2767 | 28 | 71 |
Representative plant | OGRP8402 | 7 | 16 |
Link Out ? help Back to Top | |
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Phytozome | AT5G03680.1 |
Entrez Gene | 831757 |
iHOP | AT5G03680 |
wikigenes | AT5G03680 |