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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT5G02320.1 |
Common Name | ATMYB3R5, MYB3R-5 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
MYB |
Protein Properties |
Length: 548aa MW: 61731.5 Da PI: 8.4448 |
Description |
myb domain protein 3r-5 |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 56.7 | 5.6e-18 | 75 | 121 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT+eEde l +av+++ g++Wk+Ia+ ++ Rt+ qc +rwqk+l
AT5G02320.1 75 KGGWTPEEDETLRRAVEKYKGKRWKKIAEFFP-ERTEVQCLHRWQKVL 121
688*****************************.************986 PP
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2 | Myb_DNA-binding | 61.9 | 1.3e-19 | 127 | 173 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd+++v++vk++G+ W+ Ia+ ++ gR +kqc++rw+++l
AT5G02320.1 127 KGPWTQEEDDKIVELVKKYGPAKWSVIAKSLP-GRIGKQCRERWHNHL 173
79******************************.*************97 PP
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3 | Myb_DNA-binding | 48.3 | 2.3e-15 | 179 | 222 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+++WT eE+ l + ++++G++ W+ Ia+ ++ gRt++ +k++w++
AT5G02320.1 179 KDAWTVEEESALMNSHRMYGNK-WAEIAKVLP-GRTDNAIKNHWNS 222
679*******************.*********.***********96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
GO:0030154 | Biological Process | cell differentiation |
GO:0005634 | Cellular Component | nucleus |
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding |
GO:0001135 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor recruiting |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 548 aa
Download sequence Send
to blast |
MSSSSNPPVC SPEKEERSEM KIEIQCMENK QPLAASCSSA SEGSGCFFLK SPEIATPATV 60 SSFPRRTSGP MRRAKGGWTP EEDETLRRAV EKYKGKRWKK IAEFFPERTE VQCLHRWQKV 120 LNPELVKGPW TQEEDDKIVE LVKKYGPAKW SVIAKSLPGR IGKQCRERWH NHLNPGIRKD 180 AWTVEEESAL MNSHRMYGNK WAEIAKVLPG RTDNAIKNHW NSSLKKKLEF YLATGNLPPP 240 ASKFIVLKDI ADGDRDSKQS SATKPFKDSD SLTQTSSGNT DSNEVGRDHF DSSSALLEEV 300 AASRRIGVNE YACSPVEYKP QLPNLEPISE EVRINSKAYF ERSIQRKVEN GFGTPKHGNL 360 YYKSPLDYYF PSEADLQHMY GYECGCSPGA ASPVSLMTTP CNKDSGLTAT RSPESFLREA 420 ARTFPNTPSI FRKRRKVVLA AKTDAVVVVN GVVKEVDRKE ESKDMRKSLL LETTDNCSDD 480 EELGLNGNAF NLSPPYRLRA KRTAVIKSRQ LEFTSEKEKQ PDNEIEFTSA KEKQPDNEIK 540 TSEEDKPV
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed both in proliferating and maturing stages of leaves. {ECO:0000269|PubMed:26069325}. |
Functional Description ? help
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Source |
Description |
TAIR | Encodes a putative c-MYB-like transcription factor of the MYB3R factor gene family (MYB3R5). |
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY519649 | 0.0 | AY519649.1 Arabidopsis thaliana MYB transcription factor (At5g02320) mRNA, complete cds. |
Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Stracke R,Werber M,Weisshaar B
The R2R3-MYB gene family in Arabidopsis thaliana. Curr. Opin. Plant Biol., 2001. 4(5): p. 447-56 [PMID:11597504] - Dal Bosco C, et al.
Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. J. Biol. Chem., 2004. 279(2): p. 1060-9 [PMID:14576160] - Czechowski T,Bari RP,Stitt M,Scheible WR,Udvardi MK
Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes. Plant J., 2004. 38(2): p. 366-79 [PMID:15078338] - Yanhui C, et al.
The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. Plant Mol. Biol., 2006. 60(1): p. 107-24 [PMID:16463103] - Haga N, et al.
R1R2R3-Myb proteins positively regulate cytokinesis through activation of KNOLLE transcription in Arabidopsis thaliana. Development, 2007. 134(6): p. 1101-10 [PMID:17287251] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Kobayashi K, et al.
Transcriptional repression by MYB3R proteins regulates plant organ growth. EMBO J., 2015. 34(15): p. 1992-2007 [PMID:26069325] - Chen P, et al.
Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage. Nat Commun, 2017. 8(1): p. 635 [PMID:28935922]
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