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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT5G01200.1 |
| Common Name | F7J8_180 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
MYB |
| Protein Properties |
Length: 267aa MW: 29845.2 Da PI: 5.7492 |
| Description |
MYB family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 30.1 | 1.1e-09 | 29 | 75 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46
WT+eE +++ +a + l + +W++Ia ++ g+t +++ r+
AT5G01200.1 29 TWTAEENKRFEKALAYLDDKdnleSWSKIADLIP-GKTVADVIKRYKE 75
5*****************99**************.**********975 PP
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| 2 | Myb_DNA-binding | 47.6 | 3.8e-15 | 147 | 191 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+WT++E+++++ + k++G+g+W+ Ia+ + ++Rt+ q+ s+ qky
AT5G01200.1 147 PWTEDEHLRFLMGLKKYGKGDWRNIAKSFVTTRTPTQVASHAQKY 191
8*******************************************9 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 267 aa
Download sequence Send
to blast |
MSSSTMYRGV NMFSPANTNW IFQEVREATW TAEENKRFEK ALAYLDDKDN LESWSKIADL 60
IPGKTVADVI KRYKELEDDV SDIEAGLIPI PGYGGDASSA ANSDYFFGLE NSSYGYDYVV 120
GGKRSSPAMT DCFRSPMPEK ERKKGVPWTE DEHLRFLMGL KKYGKGDWRN IAKSFVTTRT 180
PTQVASHAQK YFLRQLTDGK DKRRSSIHDI TTVNIPDADA SATATTADVA LSPTPANSFD 240
VFLQPNPHYS FASASASSYY NAFPQWS
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY519530 | 0.0 | AY519530.1 Arabidopsis thaliana MYB transcription factor (At5g01200) mRNA, complete cds. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Galego L,Almeida J
Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
Genes Dev., 2002. 16(7): p. 880-91
[PMID:11937495] - Lee BH,Henderson DA,Zhu JK
The Arabidopsis cold-responsive transcriptome and its regulation by ICE1.
Plant Cell, 2005. 17(11): p. 3155-75
[PMID:16214899] - Yanhui C, et al.
The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
Plant Mol. Biol., 2006. 60(1): p. 107-24
[PMID:16463103] - Ma S,Bohnert HJ
Integration of Arabidopsis thaliana stress-related transcript profiles, promoter structures, and cell-specific expression.
Genome Biol., 2007. 8(4): p. R49
[PMID:17408486] - Ascencio-Ib
Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
Plant Physiol., 2008. 148(1): p. 436-54
[PMID:18650403] - Machemer K, et al.
Interplay of MYB factors in differential cell expansion, and consequences for tomato fruit development.
Plant J., 2011. 68(2): p. 337-50
[PMID:21707804] - Almeida J,Rocheta M,Galego L
Genetic control of flower shape in Antirrhinum majus.
Development, 1997. 124(7): p. 1387-92
[PMID:9118809]
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