PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G38910.2
Common NameATBPC5, BBR/BPC5, BPC5, F19H22.10
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family BBR-BPC
Protein Properties Length: 283aa    MW: 31775.9 Da    PI: 9.8715
Description basic pentacysteine 5
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G38910.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind290.28.9e-8912831301
    GAGA_bind   1 mdddgsre..rnkg.yye............paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnklla 83 
                  m++ g++e  r k+ yy+            ++++l   ++++++s++aerda+++ern a++++k+a+a+rd+a+ qrdkal+er++a++e +++l a
  AT4G38910.2   1 MESGGQYEngRYKPdYYKgtqsvnvmpkkeQHNALV--MNKKIISILAERDAAVKERNEAVAATKEALASRDEALEQRDKALSERDNAIMETESALNA 96 
                  8899998889****99*9*******99865556666..9*********************************************************** PP

    GAGA_bind  84 lllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkke 181
                  l ++en+l+  l       s +k   s q           + ++e++  +  pi++ ++ea +++ +k      ++ke+k+ k  k +e+ ++ v+++
  AT4G38910.2  97 LRYRENNLNYIL-------SCAKRGGS-Q----------RFITEESHLPNPSPISTIPPEAANTRPTK------RKKESKQGK--KMGEDLNRPVASP 168
                  ******955433.......22222221.1..........22344566667889999999999888777......445555544..4457899999999 PP

    GAGA_bind 182 saderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydl 279
                  +  ++s+++++s d+    v++De t+PvP+C+CtG+ rqCYkWGnGGWqS+CCttt+S yPLP+++++r++R++grKmS+++f++lL++La+eG++l
  AT4G38910.2 169 G--KKSRKDWDSNDV---LVTFDEMTMPVPMCTCTGTARQCYKWGNGGWQSSCCTTTLSEYPLPQMPNKRHSRVGGRKMSGSVFSRLLSRLAGEGHEL 261
                  9..569********9...589***************************************************************************** PP

    GAGA_bind 280 snpvDLkdhWAkHGtnkfvtir 301
                  s pvDLk++WA+HGtn+++ti+
  AT4G38910.2 262 SSPVDLKNYWARHGTNRYITIK 283
                  *********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.2E-1451283IPR010409GAGA-binding transcriptional activator
PfamPF062171.2E-8430283IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MESGGQYENG RYKPDYYKGT QSVNVMPKKE QHNALVMNKK IISILAERDA AVKERNEAVA  60
ATKEALASRD EALEQRDKAL SERDNAIMET ESALNALRYR ENNLNYILSC AKRGGSQRFI  120
TEESHLPNPS PISTIPPEAA NTRPTKRKKE SKQGKKMGED LNRPVASPGK KSRKDWDSND  180
VLVTFDEMTM PVPMCTCTGT ARQCYKWGNG GWQSSCCTTT LSEYPLPQMP NKRHSRVGGR  240
KMSGSVFSRL LSRLAGEGHE LSSPVDLKNY WARHGTNRYI TIK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.494130.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2402562320.0
Expression AtlasAT4G38910-
AtGenExpressAT4G38910-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. {ECO:0000269|PubMed:14731261}.
Functional Description ? help Back to Top
Source Description
TAIRThe current TAIR8 structure of this gene is incorrect. The corrected structure, which will be visible in TAIR9, indicates that this gene could possibly be a pseudogene.
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00480DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G38910.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G38910
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3805710.0AY380571.1 Arabidopsis thaliana BPC5 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001190957.10.0basic pentacysteine 5
SwissprotF4JUI30.0BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBLA0A178UV750.0A0A178UV75_ARATH; BPC5
STRINGAT4G38910.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Representative plantOGRP28411331
Publications ? help Back to Top
  1. Santi L, et al.
    The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3.
    Plant J., 2003. 34(6): p. 813-26
    [PMID:12795701]
  2. Meister RJ, et al.
    Definition and interactions of a positive regulatory element of the Arabidopsis INNER NO OUTER promoter.
    Plant J., 2004. 37(3): p. 426-38
    [PMID:14731261]
  3. Castelli V, et al.
    Whole genome sequence comparisons and "full-length" cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation.
    Genome Res., 2004. 14(3): p. 406-13
    [PMID:14993207]