PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G38180.1
Common NameF20D10.300, FRS5
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family FAR1
Protein Properties Length: 788aa    MW: 90484.6 Da    PI: 6.8569
Description FAR1-related sequence 5
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G38180.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR199.53.4e-3188179291
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  fYn+YA+++GFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+  +++ +r+r+ tr+gCka+l vk++++gkw v+ ++++HnHel+p
  AT4G38180.1  88 FYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELVP 179
                  9***************************************999888555667889***********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2988179IPR004330FAR1 DNA binding domain
PfamPF105513.5E-32300392IPR018289MULE transposase domain
PfamPF044342.2E-12568614IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.608584616IPR007527Zinc finger, SWIM-type
SMARTSM005752.7E-8591618IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009639Biological Processresponse to red or far red light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MMDNEVLDFD IGVGVSSGGD VDDDAIDIEH HALDDDDMLD SPIMPCGNGL VGNSGNYFPN  60
QEEEACDLLD LEPYDGLEFE SEEAAKAFYN SYARRIGFST RVSSSRRSRR DGAIIQRQFV  120
CAKEGFRNMN EKRTKDREIK RPRTITRVGC KASLSVKMQD SGKWLVSGFV KDHNHELVPP  180
DQVHCLRSHR QISGPAKTLI DTLQAAGMGP RRIMSALIKE YGGISKVGFT EVDCRNYMRN  240
NRQKSIEGEI QLLLDYLRQM NADNPNFFYS VQGSEDQSVG NVFWADPKAI MDFTHFGDTV  300
TFDTTYRSNR YRLPFAPFTG VNHHGQPILF GCAFIINETE ASFVWLFNTW LAAMSAHPPV  360
SITTDHDAVI RAAIMHVFPG ARHRFCKWHI LKKCQEKLSH VFLKHPSFES DFHKCVNLTE  420
SVEDFERCWF SLLDKYELRD HEWLQAIYSD RRQWVPVYLR DTFFADMSLT HRSDSINSYF  480
DGYINASTNL SQFFKLYEKA LESRLEKEVK ADYDTMNSPP VLKTPSPMEK QASELYTRKL  540
FMRFQEELVG TLTFMASKAD DDGDLVTYQV AKYGEAHKAH FVKFNVLEMR ANCSCQMFEF  600
SGIICRHILA VFRVTNLLTL PPYYILKRWT RNAKSSVIFD DYNLHAYANY LESHTVRYNT  660
LRHKASNFVQ EAGKSLYTCD VAVVALQEAA KTVSLAMNKE VRRTMANRHF KASSVTGGKH  720
QQEVLAQPEP EDEMDKKINQ LRNELELANR KCEAYRTNLL SVLKEMEDQK LQVSIKVQNI  780
KISLKDNL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.311950.0flower| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306917160.0
Genevisible253030_at0.0
Expression AtlasAT4G38180-
AtGenExpressAT4G38180-
ATTED-IIAT4G38180-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G38180.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G38180
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1364570.0AY136457.1 Arabidopsis thaliana unknown protein (At4g38180) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_195531.10.0FAR1-related sequence 5
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A178UY790.0A0A178UY79_ARATH; FRS5
STRINGAT4G38180.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Representative plantOGRP3012351
Publications ? help Back to Top
  1. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  2. Lin R,Wang H
    Arabidopsis FHY3/FAR1 gene family and distinct roles of its members in light control of Arabidopsis development.
    Plant Physiol., 2004. 136(4): p. 4010-22
    [PMID:15591448]
  3. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]