PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G37260.1 | ||||||||
Common Name | ATMYB73, C7A10.100, MYB73 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 320aa MW: 34848.7 Da PI: 6.3762 | ||||||||
Description | myb domain protein 73 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.3 | 1e-19 | 13 | 58 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ll ++v+++G+++W++I++ ++ gR++k+c++rw + AT4G37260.1 13 KGPWSPEEDDLLQRLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 58 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.7e-17 | 67 | 109 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++eEde +++a++++G++ W+tI+r ++ gRt++ +k++w++ AT4G37260.1 67 AFSQEEDETIIRAHARFGNK-WATISRLLN-GRTDNAIKNHWNST 109 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.985 | 8 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.62E-31 | 10 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.4E-18 | 12 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-20 | 13 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-26 | 14 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.98E-17 | 15 | 57 | No hit | No description |
SMART | SM00717 | 2.8E-14 | 64 | 112 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.293 | 65 | 114 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.4E-14 | 67 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-22 | 67 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.63E-11 | 67 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0001135 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor recruiting | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020003 | anatomy | plant ovule | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025195 | anatomy | pollen tube cell | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MSNPTRKNME RIKGPWSPEE DDLLQRLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS 60 PEVEHRAFSQ EEDETIIRAH ARFGNKWATI SRLLNGRTDN AIKNHWNSTL KRKCSVEGQS 120 CDFGGNGGYD GNLGEEQPLK RTASGGGGVS TGLYMSPGSP SGSDVSEQSS GGAHVFKPTV 180 RSEVTASSSG EDPPTYLSLS LPWTDETVRV NEPVQLNQNT VMDGGYTAEL FPVRKEEQVE 240 VEEEEAKGIS GGFGGEFMTV VQEMIRTEVR SYMADLQRGN VGGSSSGGGG GGSCMPQSVN 300 SRRVGFREFI VNQIGIGKME |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-40 | 10 | 113 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 4e-40 | 8 | 114 | 53 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-40 | 8 | 114 | 53 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-40 | 12 | 113 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 4e-40 | 12 | 113 | 3 | 104 | C-Myb DNA-Binding Domain |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.56989 | 0.0 | flower| inflorescence| leaf| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 246253_at | 0.0 | ||||
Expression Atlas | AT4G37260 | - | ||||
AtGenExpress | AT4G37260 | - | ||||
ATTED-II | AT4G37260 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Member of the R2R3 factor gene family. | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00476 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G37260.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Regulation -- Hormone ? help Back to Top | ||||||
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Source | Hormone | |||||
AHD | abscisic acid, auxin, ethylene, gibberellin, jasmonic acid, salicylic acid |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G37260 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL161591 | 0.0 | AL161591.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 87. | |||
GenBank | AY063912 | 0.0 | AY063912.1 Arabidopsis thaliana putative myb-related protein (At4g37260) mRNA, complete cds. | |||
GenBank | AY091267 | 0.0 | AY091267.1 Arabidopsis thaliana putative myb-related protein (At4g37260) mRNA, complete cds. | |||
GenBank | AY519613 | 0.0 | AY519613.1 Arabidopsis thaliana MYB transcription factor (At4g37260) mRNA, complete cds. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | Z99707 | 0.0 | Z99707.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_195443.1 | 0.0 | myb domain protein 73 | ||||
Swissprot | O23160 | 0.0 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A178V4E7 | 0.0 | A0A178V4E7_ARATH; MYB73 | ||||
STRING | AT4G37260.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM677 | 28 | 135 |
Representative plant | OGRP5 | 17 | 1784 |
Link Out ? help Back to Top | |
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Phytozome | AT4G37260.1 |
Entrez Gene | 829880 |
iHOP | AT4G37260 |
wikigenes | AT4G37260 |